Josh D. Neufeld

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Michael DJ LynchMetagenom Bio Life Science and Department of Biology, University of WaterlooVerified email at uwaterloo.ca
Murrell JCUniversity of East Anglia,Verified email at uea.ac.uk
Michael HallDalhousie UniversityVerified email at dal.ca
Andrea K BartramUniversity of WaterlooVerified email at uwaterloo.ca
Marc G DumontSchool of Biological Sciences, University of Southampton UKVerified email at soton.ac.uk
William W. MohnProfessor, University of British ColumbiaVerified email at mail.ubc.ca
Trevor CharlesUniversity of Waterloo, Waterloo Centre for Microbial Research, Metagenom BioVerified email at uwaterloo.ca
Andre MasellaResearch Associate, University of WaterlooVerified email at uwaterloo.ca
Andrew DoxeyAssociate Professor, University of WaterlooVerified email at uwaterloo.ca
Gabriel Moreno-HagelsiebWilfrid Laurier UniversityVerified email at wlu.ca
Sherry SchiffProfessor, Earth & Environmental Sciences, University of WaterlooVerified email at uwaterloo.ca
Jennifer StearnsMcMaster UniversityVerified email at mcmaster.ca
Ashley A. Stegelmeier (née Ross)PhD Candidate, University of GuelphVerified email at uoguelph.ca
Yin ChenUniversity of WarwickVerified email at warwick.ac.uk
Michael WagnerProfessor for Microbial Ecology, University of ViennaVerified email at microbial-ecology.net
Dilani B. SenadheeraAssistant Professor, University of TorontoVerified email at utoronto.ca
Howard C TenenbaumUniversity of Toronto, Faculty of DentistryVerified email at dentistry.utoronto.ca
Michael B GoldbergAssociate Professor, University of TorontoVerified email at dentistry.utoronto.ca
V.K. WalkerQueen's UniversityVerified email at queensu.ca
Jakub TruszkowskiPostdoctoral Researcher, CNRS-LIRMM, University of MontpellierVerified email at lirmm.fr

Josh D. Neufeld

Department of Biology, University of Waterloo

Verified email at uwaterloo.ca - Homepage

Microbiology microbial ecology human microbiome


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
PANDAseq: paired-end assembler for Illumina sequences AP Masella, AK Bartram, JM Truszkowski, DG Brown, JD Neufeld BMC Bioinformatics 13 (1), 31, 2012	1890	2012
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	1440	2017
Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads AK Bartram, MDJ Lynch, JC Stearns, G Moreno-Hagelsieb, JD Neufeld Applied and Environmental Microbiology 77 (11), 3846-3852, 2011	851	2011
Ecology and exploration of the rare biosphere MDJ Lynch, JD Neufeld Nature Reviews Microbiology 13 (4), 217-229, 2015	688	2015
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature Biotechnology 29 (5), 415-420, 2011	570	2011
DNA stable-isotope probing JD Neufeld, J Vohra, MG Dumont, T Lueders, M Manefield, MW Friedrich, ... Nature Protocols 2 (4), 860-866, 2007	451	2007
Bacterial biogeography of the human digestive tract JC Stearns, MDJ Lynch, DB Senadheera, HC Tenenbaum, MB Goldberg, ... Scientific Reports 1, 170, 2011	402	2011
Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice G De Palma, MDJ Lynch, J Lu, VT Dang, Y Deng, J Jury, G Umeh, ... Science Translational Medicine 9 (379), eaaf6397, 2017	363	2017
Who eats what, where and when? Isotope-labelling experiments are coming of age JD Neufeld, M Wagner, JC Murrell The ISME Journal 1 (2), 103-110, 2007	264	2007
Methodological considerations for the use of stable isotope probing in microbial ecology JD Neufeld, MG Dumont, J Vohra, JC Murrell Microbial Ecology 53 (3), 435-442, 2007	249	2007
Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles K Kennedy, MW Hall, MDJ Lynch, G Moreno-Hagelsieb, JD Neufeld Applied and Environmental Microbiology, 2014	221	2014
Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology EK Binga, RS Lasken, JD Neufeld The ISME Journal 2 (3), 233-241, 2008	216	2008
Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism JD Neufeld, H Schäfer, MJ Cox, R Boden, IR McDonald, JC Murrell The ISME Journal 1 (6), 480-491, 2007	190	2007
Denaturing gradient gel electrophoresis (DGGE) for microbial community analysis SJ Green, MB Leigh, JD Neufeld Hydrocarbon and lipid microbiology protocols, 77-99, 2015	177	2015
Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils, revealed by serial analysis of ribosomal sequence tags JD Neufeld, WW Mohn Applied and Environmental Microbiology 71 (10), 5710-5718, 2005	176	2005
Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria P Sonthiphand, MW Hall, JD Neufeld Frontiers in Microbiology 5, 399, 2014	161	2014
Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm AK Bartram, X Jiang, MDJ Lynch, AP Masella, GW Nicol, J Dushoff, ... FEMS Microbiology Ecology 87 (2), 403-415, 2014	152	2014
Comparison of chloroform fumigation-extraction, phospholipid fatty acid, and DNA methods to determine microbial biomass in forest humus SE Leckie, CE Prescott, SJ Grayston, JD Neufeld, WW Mohn Soil Biology and Biochemistry 36 (3), 529-532, 2004	150	2004
Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia AA Ross, KM Müller, JS Weese, JD Neufeld Proceedings of the National Academy of Sciences 115 (25), E5786-E5795, 2018	149	2018
Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system LA Sauder, M Albertsen, K Engel, J Schwarz, PH Nielsen, M Wagner, ... The ISME Journal 11 (5), 1142, 2017	146	2017

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