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Tomer Altman
Tomer Altman
Senior Bioinformaticist, Altman Analytics LLC
E-mailová adresa ověřena na: altmananalytics.com - Domovská stránka
Název
Citace
Citace
Rok
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ...
Nucleic acids research 42 (D1), D459-D471, 2014
3524*2014
EcoCyc: a comprehensive database of Escherichia coli biology
IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ...
Nucleic acids research 39 (suppl_1), D583-D590, 2010
6522010
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ...
Briefings in bioinformatics 11 (1), 40-79, 2010
6162010
Petabase-scale sequence alignment catalyses viral discovery
RC Edgar, B Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ...
Nature 602 (7895), 142-147, 2022
4002022
A systematic comparison of the MetaCyc and KEGG pathway databases
T Altman, M Travers, A Kothari, R Caspi, PD Karp
BMC bioinformatics 14, 1-15, 2013
2002013
Metabolic pathways for the whole community
NW Hanson, KM Konwar, AK Hawley, T Altman, PD Karp, SJ Hallam
BMC genomics 15, 1-14, 2014
662014
Beyond the genome (BTG) is a (PGDB) pathway genome database: HumanCyc
M Trupp, T Altman, CA Fulcher, R Caspi, M Krummenacker, S Paley, ...
Genome biology 11, 1-1, 2010
532010
56 BIBLIOGRAPHY Suzanne Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, and Peter D. Karp. The MetaCyc database of metabolic pathways and …
R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ...
Nucleic acids research 42 (D1), D459-D471, 2014
502014
A comparative evaluation of tools to predict metabolite profiles from microbiome sequencing data
X Yin, T Altman, E Rutherford, KA West, Y Wu, J Choi, PL Beck, ...
Frontiers in microbiology 11, 595910, 2020
272020
Finding sequences for over 270 orphan enzymes
AG Shearer, T Altman, CD Rhee
PLoS One 9 (5), e97250, 2014
222014
Data mining in the MetaCyc family of pathway databases
PD Karp, S Paley, T Altman
Data mining for systems biology: methods and protocols, 183-200, 2012
152012
Methods and compositions for determining metabolic maps
C Cutcliffe, JS Eid, JH Bullard, T Altman, F Perraudeau
US Patent App. 15/945,705, 2018
132018
Methods and compositions relating to isolated and purified microbes
C Cutcliffe, JS Eid, JH Bullard, MF Schicklberger, AT Cheng, ...
US Patent App. 16/431,257, 2020
102020
A geographically-diverse collection of 418 human gut microbiome pathway genome databases
AS Hahn, T Altman, KM Konwar, NW Hanson, D Kim, DA Relman, DL Dill, ...
Scientific Data 4 (1), 1-12, 2017
92017
Methods and compositions for treatment of microbiome-associated disorders
C Cutcliffe, JS Eid, T Altman, OG Kolterman, JH Bullard
US Patent 11,583,558, 2023
52023
BioCyc: Microbial Genomes and Cellular Networks-The BioCyc system helps scientists navigate the greatly expanding information space of genomes and metabolic information
PD Karp, IM Keseler, T Altman, R Caspi, CA Fulcher, P Subhraveti, ...
Microbe 6 (4), 176, 2011
22011
GutCyc: a Multi-Study Collection of Human Gut Microbiome Metabolic Models
AS Hahn, T Altman, KM Konwar, NW Hanson, D Kim, DA Relman, DL Dill, ...
BioRxiv, 055574, 2016
12016
The Pathway Tools Software in 2009
PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, T Lee, ...
S225–S232 p, 0
1
Methods and compositions for treatment of microbiome associated disorders
C Cutcliffe, JS Eid, T Altman, OG Kolterman, JH Bullard
US Patent 12,233,095, 2025
2025
MetaPathways v3. 5: Modularity and Scalability Improvements for Pathway Inference from Environmental Genomes
RJ McLaughlin, TX Liu, T Altman, AN Nallan, AS Hahn, J Anstett, ...
bioRxiv, 2024.06. 04.597460, 2024
2024
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Články 1–20