| A global reference for human genetic variation 1000 Genomes Project Consortium Nature 526 (7571), 68, 2015 | 12614 | 2015 |
| ABySS: a parallel assembler for short read sequence data JT Simpson, K Wong, SD Jackman, JE Schein, SJM Jones, I Birol Genome research 19 (6), 1117-1123, 2009 | 3986 | 2009 |
| Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018 | 1623 | 2018 |
| Real-time, portable genome sequencing for Ebola surveillance J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ... Nature 530 (7589), 228-232, 2016 | 1312 | 2016 |
| Shotgun metagenomics, from sampling to analysis C Quince, AW Walker, JT Simpson, NJ Loman, N Segata Nature biotechnology 35 (9), 833-844, 2017 | 1261 | 2017 |
| A complete bacterial genome assembled de novo using only nanopore sequencing data NJ Loman, J Quick, JT Simpson Nature methods 12 (8), 733-735, 2015 | 1185 | 2015 |
| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1147 | 2020 |
| Complex landscapes of somatic rearrangement in human breast cancer genomes PJ Stephens, DJ McBride, ML Lin, I Varela, ED Pleasance, JT Simpson, ... Nature 462 (7276), 1005-1010, 2009 | 980 | 2009 |
| Efficient de novo assembly of large genomes using compressed data structures JT Simpson, R Durbin Genome research 22 (3), 549-556, 2012 | 918 | 2012 |
| Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017 | 863 | 2017 |
| Insights into hominid evolution from the gorilla genome sequence A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ... Nature 483 (7388), 169-175, 2012 | 783 | 2012 |
| Detecting DNA cytosine methylation using nanopore sequencing JT Simpson, RE Workman, PC Zuzarte, M David, LJ Dursi, W Timp Nature Methods 14 (4), 407, 2017 | 764 | 2017 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 760 | 2013 |
| Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ... Genome research 27 (5), 849-864, 2017 | 693 | 2017 |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 606 | 2011 |
| Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ... Nature 546 (7658), 406-410, 2017 | 576 | 2017 |
| A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns F Notta, M Chan-Seng-Yue, M Lemire, Y Li, GW Wilson, AA Connor, ... Nature 538 (7625), 378-382, 2016 | 496 | 2016 |
| Nanopore native RNA sequencing of a human poly (A) transcriptome RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ... Nature methods 16 (12), 1297-1305, 2019 | 420 | 2019 |
| Trait variation in yeast is defined by population history J Warringer, E Zörgö, FA Cubillos, A Zia, A Gjuvsland, JT Simpson, ... PLoS genetics 7 (6), e1002111, 2011 | 349 | 2011 |
| The khmer software package: enabling efficient nucleotide sequence analysis [version 1; referees: 2 approved, 1 approved with reservations] MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ... | 338 | 2015 |
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
