| Reconstructing the early evolution of Fungi using a six-gene phylogeny TY James, F Kauff, CL Schoch, PB Matheny, V Hofstetter, CJ Cox, G Celio, ... Nature 443 (7113), 818-822, 2006 | 2121 | 2006 |
| Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits F Lutzoni, F Kauff, CJ Cox, D McLaughlin, G Celio, B Dentinger, ... American journal of botany 91 (10), 1446-1480, 2004 | 922 | 2004 |
| The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits CL Schoch, GH Sung, F López-Giráldez, JP Townsend, J Miadlikowska, ... Systematic biology 58 (2), 224-239, 2009 | 751 | 2009 |
| Host and geographic structure of endophytic and endolichenic fungi at a continental scale JM U'Ren, F Lutzoni, J Miadlikowska, AD Laetsch, AE Arnold American journal of botany 99 (5), 898-914, 2012 | 459 | 2012 |
| A five-gene phylogeny of Pezizomycotina JW Spatafora, GH Sung, D Johnson, C Hesse, B O’Rourke, M Serdani, ... Mycologia 98 (6), 1018-1028, 2006 | 459 | 2006 |
| Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages KL Higgins, AE Arnold, J Miadlikowska, SD Sarvate, F Lutzoni Molecular phylogenetics and evolution 42 (2), 543-555, 2007 | 410 | 2007 |
| A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification? AE Arnold, J Miadlikowska, KL Higgins, SD Sarvate, P Gugger, A Way, ... Systematic biology 58 (3), 283-297, 2009 | 409 | 2009 |
| New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA-and two protein-coding genes J Miadlikowska, F Kauff, V Hofstetter, E Fraker, M Grube, J Hafellner, ... Mycologia 98 (6), 1088-1103, 2006 | 354 | 2006 |
| A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families J Miadlikowska, F Kauff, F Högnabba, JC Oliver, K Molnár, E Fraker, ... Molecular Phylogenetics and evolution 79, 132-168, 2014 | 309 | 2014 |
| Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence A Crespo, F Kauff, PK Divakar, R del Prado, S Pérez-Ortega, GA de Paz, ... Taxon 59 (6), 1735-1753, 2010 | 271 | 2010 |
| Eurotiomycetes: eurotiomycetidae and chaetothyriomycetidae DM Geiser, C Gueidan, J Miadlikowska, F Lutzoni, F Kauff, V Hofstetter, ... Mycologia 98 (6), 1053-1064, 2006 | 269 | 2006 |
| Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens JM U’Ren, F Lutzoni, J Miadlikowska, AE Arnold Microbial ecology 60, 340-353, 2010 | 266 | 2010 |
| Contemporaneous radiations of fungi and plants linked to symbiosis F Lutzoni, MD Nowak, ME Alfaro, V Reeb, J Miadlikowska, M Krug, ... Nature Communications 9 (1), 5451, 2018 | 231 | 2018 |
| Phylogenetic Revision of the Genus Peltigera (Lichen‐Forming Ascomycota) Based on Morphological, Chemical, and Large Subunit Nuclear Ribosomal DNA Data J Miadlikowska, F Lutzoni International Journal of Plant Sciences 161 (6), 925-958, 2000 | 215 | 2000 |
| Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: a case study of the Lecanoromycetes (Ascomycota) V Hofstetter, J Miadlikowska, F Kauff, F Lutzoni Molecular phylogenetics and evolution 44 (1), 412-426, 2007 | 187 | 2007 |
| Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota) JM U’Ren, J Miadlikowska, NB Zimmerman, F Lutzoni, JE Stajich, ... Molecular Phylogenetics and Evolution 98, 210-232, 2016 | 165 | 2016 |
| Assessing host specialization in symbiotic cyanobacteria associated with four closely related species of the lichen fungus Peltigera HE O'Brien, J Miadlikowska, FÇ Lutzoni European journal of phycology 40 (4), 363-378, 2005 | 147 | 2005 |
| Evolution of complex symbiotic relationships in a morphologically derived family of lichen‐forming fungi PK Divakar, A Crespo, M Wedin, SD Leavitt, DL Hawksworth, L Myllys, ... New Phytologist 208 (4), 1217-1226, 2015 | 144 | 2015 |
| Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits J Miadlikowska, F Lutzoni American Journal of Botany 91 (3), 449-464, 2004 | 141 | 2004 |
| Phylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota) M Schmull, J Miadlikowska, M Pelzer, E Stocker-Wörgötter, V Hofstetter, ... Mycologia 103 (5), 983-1003, 2011 | 126 | 2011 |
