| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 13842 | 2012 |
| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 5961 | 2015 |
| Architecture of the human regulatory network derived from ENCODE data MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ... Nature 489 (7414), 91-100, 2012 | 1642 | 2012 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1443 | 2011 |
| Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications RA Harris, T Wang, C Coarfa, RP Nagarajan, C Hong, SL Downey, ... Nature biotechnology 28 (10), 1097-1105, 2010 | 759 | 2010 |
| Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy T Fujiwara, H O'Geen, S Keles, K Blahnik, AK Linnemann, YA Kang, ... Molecular cell 36 (4), 667-681, 2009 | 406 | 2009 |
| Suz12 binds to silenced regions of the genome in a cell-type-specific manner SL Squazzo, H O’Geen, VM Komashko, SR Krig, VX Jin, S Jang, ... Genome research 16 (7), 890-900, 2006 | 393 | 2006 |
| The production of recombinant proteins in transgenic barley grains H Horvath, J Huang, O Wong, E Kohl, T Okita, CG Kannangara, ... Proc. Natl. Acad. Sci. USA97 97, 1914-1919, 2000 | 264 | 2000 |
| Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs H O'Geen, SL Squazzo, S Iyengar, K Blahnik, JL Rinn, HY Chang, ... PLoS genetics 3 (6), e89, 2007 | 263 | 2007 |
| A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture H O'Geen, IM Henry, MS Bhakta, JF Meckler, DJ Segal Nucleic acids research 43 (6), 3389-3404, 2015 | 256 | 2015 |
| DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape M Xie, C Hong, B Zhang, RF Lowdon, X Xing, D Li, X Zhou, HJ Lee, ... Nature genetics 45 (7), 836-841, 2013 | 240 | 2013 |
| dCas9-based epigenome editing suggests acquisition of histone methylation is not sufficient for target gene repression H O’Geen, C Ren, CM Nicolet, AA Perez, J Halmai, VM Le, JP Mackay, ... Nucleic acids research 45 (17), 9901-9916, 2017 | 213 | 2017 |
| Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm B Zhang, Y Zhou, N Lin, RF Lowdon, C Hong, RP Nagarajan, JB Cheng, ... Genome research 23 (9), 1522-1540, 2013 | 210 | 2013 |
| Comparison of sample preparation methods for ChIP-chip assays H O’Geen, CM Nicolet, K Blahnik, R Green, PJ Farnham BioTechniques 41, 577-580, 2006 | 184 | 2006 |
| ZNF274 recruits the histone methyltransferase SETDB1 to the 3′ ends of ZNF genes S Frietze, H O'Geen, KR Blahnik, VX Jin, PJ Farnham PloS one 5 (12), e15082, 2010 | 179 | 2010 |
| Using ChIP-seq technology to generate high-resolution profiles of histone modifications H O’Geen, L Echipare, PJ Farnham Epigenetics Protocols, 265-286, 2011 | 174 | 2011 |
| Genetically engineered stem rust resistance in barley using the Rpg1 gene H Horvath, N Rostoks, R Brueggeman, B Steffenson, D Von Wettstein, ... Proceedings of the National Academy of Sciences 100 (1), 364-369, 2003 | 165 | 2003 |
| Autophagy driven by a master regulator of hematopoiesis YA Kang, R Sanalkumar, H O'geen, AK Linnemann, CJ Chang, ... Molecular and cellular biology, 2012 | 157 | 2012 |
| Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data KR Blahnik, L Dou, H O'Geen, T McPhillips, X Xu, AR Cao, S Iyengar, ... Nucleic acids research 38 (3), e13-e13, 2010 | 149 | 2010 |
| How specific is CRISPR/Cas9 really? H O’Geen, SY Abigail, DJ Segal Current opinion in chemical biology 29, 72-78, 2015 | 141 | 2015 |
Peggy J. FarnhamWIlliam M Keck Professor of Biochemistry, University of Southern CaliforniaVerified email at usc.edu
