Ramya Raviram
Ramya Raviram
New York Genome Center/Weill Cornell Medical College
Verified email at - Homepage
Cited by
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CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
V Narendra, PP Rocha, D An, R Raviram, JA Skok, EO Mazzoni, ...
Science 347 (6225), 1017-1021, 2015
Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation
S Preissl, R Fang, H Huang, Y Zhao, R Raviram, DU Gorkin, Y Zhang, ...
Nature neuroscience 21 (3), 432-439, 2018
Circular ecDNA promotes accessible chromatin and high oncogene expression
S Wu, KM Turner, N Nguyen, R Raviram, M Erb, J Santini, J Luebeck, ...
Nature 575 (7784), 699-703, 2019
Capturing the onset of PRC2-mediated repressive domain formation
O Oksuz, V Narendra, CH Lee, N Descostes, G LeRoy, R Raviram, ...
Molecular cell 70 (6), 1149-1162. e5, 2018
Cohesin loss alters adult hematopoietic stem cell homeostasis, leading to myeloproliferative neoplasms
J Mullenders, B Aranda-Orgilles, P Lhoumaud, M Keller, J Pae, K Wang, ...
Journal of Experimental Medicine 212 (11), 1833-1850, 2015
NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling
S Chowdhry, C Zanca, U Rajkumar, T Koga, Y Diao, R Raviram, F Liu, ...
Nature 569 (7757), 570-575, 2019
CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci
Y Fu, PP Rocha, VM Luo, R Raviram, Y Deng, EO Mazzoni, JA Skok
Nature communications 7 (1), 11707, 2016
Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase
L Patel, R Kang, SC Rosenberg, Y Qiu, R Raviram, S Chee, R Hu, B Ren, ...
Nature structural & molecular biology 26 (3), 164-174, 2019
MED12 regulates HSC-specific enhancers independently of mediator kinase activity to control hematopoiesis
B Aranda-Orgilles, R Saldaņa-Meyer, E Wang, E Trompouki, A Fassl, ...
Cell stem cell 19 (6), 784-799, 2016
4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments
R Raviram, PP Rocha, CL Müller, ER Miraldi, S Badri, Y Fu, E Swanzey, ...
PLoS computational biology 12 (3), e1004780, 2016
Low-grade astrocytoma mutations in IDH1, P53, and ATRX cooperate to block differentiation of human neural stem cells via repression of SOX2
AS Modrek, D Golub, T Khan, D Bready, J Prado, C Bowman, J Deng, ...
Cell reports 21 (5), 1267-1280, 2017
MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
I Juric, M Yu, A Abnousi, R Raviram, R Fang, Y Zhao, Y Zhang, Y Qiu, ...
PLoS computational biology 15 (4), e1006982, 2019
Long-range regulation of V (D) J recombination
C Proudhon, B Hao, R Raviram, J Chaumeil, JA Skok
Advances in immunology 128, 123-182, 2015
Breaking TADs: insights into hierarchical genome organization
PP Rocha, R Raviram, R Bonneau, JA Skok
Epigenomics 7 (4), 523-526, 2015
Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions
T Jiang, R Raviram, V Snetkova, PP Rocha, C Proudhon, S Badri, ...
Nucleic acids research 44 (18), 8714-8725, 2016
Active and inactive enhancers cooperate to exert localized and long-range control of gene regulation
C Proudhon, V Snetkova, R Raviram, C Lobry, S Badri, T Jiang, B Hao, ...
Cell reports 15 (10), 2159-2169, 2016
Mediator facilitates transcriptional activation and dynamic long-range contacts at the IgH locus during class switch recombination
AS Thomas-Claudepierre, I Robert, PP Rocha, R Raviram, E Schiavo, ...
Journal of Experimental Medicine 213 (3), 303-312, 2016
Targeting histone acetylation dynamics and oncogenic transcription by catalytic P300/CBP inhibition
SJ Hogg, O Motorna, LA Cluse, TM Johanson, HD Coughlan, R Raviram, ...
Molecular cell 81 (10), 2183-2200. e13, 2021
Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate
R Raviram, PP Rocha, VM Luo, E Swanzey, ER Miraldi, EB Chuong, ...
Genome biology 19, 1-19, 2018
A damage-independent role for 53BP1 that impacts break order and Igh architecture during class switch recombination
PP Rocha, R Raviram, Y Fu, JH Kim, VM Luo, A Aljoufi, E Swanzey, ...
Cell reports 16 (1), 48-55, 2016
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