| P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure R Krivák, D Hoksza Journal of cheminformatics 10, 1-12, 2018 | 304 | 2018 |
| PrankWeb: a web server for ligand binding site prediction and visualization L Jendele, R Krivak, P Skoda, M Novotny, D Hoksza Nucleic acids research 47 (W1), W345-W349, 2019 | 269 | 2019 |
| PDBe-KB: a community-driven resource for structural and functional annotations M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ... Nucleic Acids Research 48 (D1), D344-D353, 2020 | 75 | 2020 |
| PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures D Jakubec, P Skoda, R Krivak, M Novotny, D Hoksza Nucleic Acids Research 50 (W1), W593-W597, 2022 | 70 | 2022 |
| Improving protein-ligand binding site prediction accuracy by classification of inner pocket points using local features R Krivák, D Hoksza Journal of cheminformatics 7, 1-13, 2015 | 66 | 2015 |
| PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022 | 32 | 2022 |
| P2RANK: Knowledge-based ligand binding site prediction using aggregated local features R Krivák, D Hoksza Algorithms for Computational Biology: Second International Conference, AlCoB …, 2015 | 11 | 2015 |
| Peptide-Binding site prediction from protein structure via points on the solvent accessible surface R Krivák, L Jendele, D Hoksza Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 9 | 2018 |
| Improving quality of ligand-binding site prediction with Bayesian optimization R Krivák, D Hoksza, P Škoda 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 5 | 2017 |
| AHoJ: rapid, tailored search and retrieval of apo and holo protein structures for user-defined ligands CP Feidakis, R Krivak, D Hoksza, M Novotny Bioinformatics 38 (24), 5452-5453, 2022 | 4 | 2022 |
| Supplementary material for PrankWeb: web server for ligand binding site prediction and visualization L Jendele, R Krivak, P Skoda, M Novotny, D Hoksza Proteins 420, 4009, 0 | 1 | |
| AHoJ-DB: A PDB-wide Assignment of apo & holo Relationships Based on Individual Protein–Ligand Interactions CP Feidakis, R Krivak, D Hoksza, M Novotny Journal of Molecular Biology, 168545, 2024 | | 2024 |
David HokszaCharles UniversityVerified email at matfyz.cuni.cz
