Pablo Cordero
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RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ...
Rna 21 (6), 1066-1084, 2015
Phased whole-genome genetic risk in a family quartet using a major allele reference sequence
FE Dewey, R Chen, SP Cordero, KE Ormond, C Caleshu, KJ Karczewski, ...
PLoS genetics 7 (9), e1002280, 2011
Understanding the errors of SHAPE-directed RNA structure modeling
W Kladwang, CC VanLang, P Cordero, R Das
Biochemistry 50 (37), 8049-8056, 2011
Quantitative dimethyl sulfate mapping for automated RNA secondary structure inference
P Cordero, W Kladwang, CC VanLang, R Das
Biochemistry-Columbus 51 (36), 7037, 2012
A two-dimensional mutate-and-map strategy for non-coding RNA structure
W Kladwang, CC VanLang, P Cordero, R Das
Nature chemistry 3 (12), 954-962, 2011
An RNA Mapping Database for curating RNA structure mapping experiments
P Cordero, JB Lucks, R Das
Bioinformatics, 2012
Consistent global structures of complex RNA states through multidimensional chemical mapping
CY Cheng, FC Chou, W Kladwang, S Tian, P Cordero, R Das
Elife 4, e07600, 2015
High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states
S Tian, P Cordero, W Kladwang, R Das
Rna 20 (11), 1815-1826, 2014
Whole‐genome sequencing in personalized therapeutics
P Cordero, EA Ashley
Clinical Pharmacology & Therapeutics 91 (6), 1001-1009, 2012
A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA
W Kladwang, P Cordero, R Das
Rna 17 (3), 522-534, 2011
Rich RNA structure landscapes revealed by mutate-and-map analysis
P Cordero, R Das
PLoS computational biology 11 (11), e1004473, 2015
The Mutate-and-Map Protocol for Inferring Base Pairs in Structured RNA
P Cordero, W Kladwang, CC VanLang, R Das
RNA Folding 1086, 53-77, 2013
HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis
H Kim, P Cordero, R Das, S Yoon
Nucleic acids research 41 (W1), W492-W498, 2013
Sharing and archiving nucleic acid structure mapping data
P Rocca-Serra, S Bellaousov, A Birmingham, C Chen, P Cordero, R Das, ...
Rna 17 (7), 1204-1212, 2011
Interpretome: a freely available, modular, and secure personal genome interpretation engine
KJ Karczewski, RP Tirrell, P Cordero, NP Tatonetti, JT Dudley, K Salari, ...
Biocomputing 2012, 339-350, 2012
Allele-specific silencing ameliorates restrictive cardiomyopathy attributable to a human myosin regulatory light chain mutation
K Zaleta-Rivera, A Dainis, AJS Ribeiro, P Cordero, G Rubio, C Shang, ...
Circulation 140 (9), 765-778, 2019
Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability
A Das, M Morley, CS Moravec, WHW Tang, H Hakonarson, ...
Nature communications 6 (1), 8555, 2015
Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure
P Cordero, VN Parikh, ET Chin, A Erbilgin, MJ Gloudemans, C Shang, ...
Nature communications 10 (1), 2760, 2019
Primerize: automated primer assembly for transcribing non-coding RNA domains
S Tian, JD Yesselman, P Cordero, R Das
Nucleic acids research 43 (W1), W522-W526, 2015
Tracing co-regulatory network dynamics in noisy, single-cell transcriptome trajectories
P Cordero, JM Stuart
Pacific Symposium on Biocomputing 2017, 576-587, 2017
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Articles 1–20