Alan M Moses

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Michael B. EisenInvestigator, HHMI and Associate Professor of Molecular and Cell Biology, UC BerkeleyVerified email at berkeley.edu
Alex N Nguyen BaAssistant Professor, University of TorontoVerified email at utoronto.ca
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Brenda AndrewsDirector, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Taraneh ZarinPostdoctoral Researcher, Centre for Genomic RegulationVerified email at crg.eu
Edward J LouisProfessor of Genetics, University of LeicesterVerified email at le.ac.uk
Gianni LitiIRCAN, CNRS, INSERM, Université Côte d'Azur, University of NiceVerified email at unice.fr
Venky Iyer Nandagopalex-UC Berkeley, ex-Facebook, ex-FinVerified email at berkeley.edu
Daniel PollardWestern Washington UniversityVerified email at wwu.edu
Amin Zia, PhDStealth companyVerified email at dycode.bio
Derek ChiangBayerVerified email at bayer.com
Jonas WarringerUniversity of GothenburgVerified email at cmb.gu.se
Julie D Forman-KayHospital for Sick Children; University of TorontoVerified email at sickkids.ca
Alex LuMicrosoft ResearchVerified email at microsoft.com
Jared SimpsonOntario Institute for Cancer ResearchVerified email at oicr.on.ca
Iva PritišanacPostdoctoral Fellow, The Hospital for Sick Children, TorontoVerified email at sickkids.ca
Nicholas ProvartProfessor and Departmental Chair, Cell & Systems Biology, University of TorontoVerified email at utoronto.ca
Francisco A. CubillosUniversidad de Santiago de ChileVerified email at usach.cl
Leopold PartsFaculty at Wellcome Sanger Institute; Senior Researcher (part-time) at University of TartuVerified email at sanger.ac.uk
Ian Shenyen HsuPhD, Department of Cell & System Biology, University of TorontoVerified email at mail.utoronto.ca

Alan M Moses

Professor, University of Toronto

Verified email at utoronto.ca - Homepage

Computational Biology Molecular Evolution Bioinformatics Regulatory Networks Systems Biology


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Population genomics of domestic and wild yeasts G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ... Nature 458 (7236), 337-341, 2009	1580	2009
In vivo enhancer analysis of human conserved non-coding sequences LA Pennacchio, N Ahituv, AM Moses, S Prabhakar, MA Nobrega, ... Nature 444 (7118), 499-502, 2006	1271	2006
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction AN Nguyen Ba, A Pogoutse, N Provart, AM Moses BMC bioinformatics 10, 1-11, 2009	570	2009
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting DA Pollard, VN Iyer, AM Moses, MB Eisen PLoS genetics 2 (10), e173, 2006	414	2006
TreeFam: 2008 update J Ruan, H Li, Z Chen, A Coghlan, LJM Coin, Y Guo, JK Heriche, Y Hu, ... Nucleic acids research 36 (suppl_1), D735-D740, 2007	355	2007
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq, RJ Williamson, ... Nature genetics 45 (8), 891-898, 2013	353	2013
Trait variation in yeast is defined by population history J Warringer, E Zörgö, FA Cubillos, A Zia, A Gjuvsland, JT Simpson, ... PLoS genetics 7 (6), e1002111, 2011	349	2011
Yeast proteome dynamics from single cell imaging and automated analysis YT Chong, JLY Koh, H Friesen, SK Duffy, MJ Cox, A Moses, J Moffat, ... Cell 161 (6), 1413-1424, 2015	303	2015
Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen PLoS computational biology 2 (10), e130, 2006	297	2006
A high-definition view of functional genetic variation from natural yeast genomes A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ... Molecular biology and evolution 31 (4), 872-888, 2014	294	2014
Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi AP Gasch, AM Moses, DY Chiang, HB Fraser, M Berardini, MB Eisen PLoS biology 2 (12), e398, 2004	276	2004
Revealing the genetic structure of a trait by sequencing a population under selection L Parts, FA Cubillos, J Warringer, K Jain, F Salinas, SJ Bumpstead, ... Genome research 21 (7), 1131-1138, 2011	272	2011
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen Genome biology 5 (12), 1-15, 2004	208	2004
Position specific variation in the rate of evolution in transcription factor binding sites AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen BMC evolutionary biology 3 (1), 1-13, 2003	196	2003
Short linear motifs – ex nihilo evolution of protein regulation NE Davey, MS Cyert, AM Moses Cell Communication and Signaling 13, 1-15, 2015	177	2015
Evidence for widespread adaptive evolution of gene expression in budding yeast HB Fraser, AM Moses, EE Schadt Proceedings of the National Academy of Sciences 107 (7), 2977-2982, 2010	166	2010
Phylogenetic motif detection by expectation-maximization on evolutionary mixtures AM Moses, DY Chiang, MB Eisen Biocomputing 2004, 324-335, 2003	127	2003
A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis S Lumba, S Toh, LF Handfield, M Swan, R Liu, JY Youn, SR Cutler, ... Developmental Cell 29 (3), 360-372, 2014	125	2014
Proteome-wide discovery of evolutionary conserved sequences in disordered regions AN Nguyen Ba, BJ Yeh, D Van Dyk, AR Davidson, BJ Andrews, EL Weiss, ... Science signaling 5 (215), rs1-rs1, 2012	115	2012
Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase AM Moses, JK Hériché, R Durbin Genome biology 8 (2), 1-14, 2007	109	2007

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