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David Sebastian Fischer
David Sebastian Fischer
Broad Institute of MIT and Harvard
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature medicine 27 (3), 546-559, 2021
548*2021
Squidpy: a scalable framework for spatial omics analysis
G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ...
Nature Methods, 1-8, 2022
353*2022
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation
AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund, ...
Molecular Systems Biology 18 (3), e10798, 2022
3442022
Single cells make big data: new challenges and opportunities in transcriptomics
P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis
Current Opinion in Systems Biology 4, 85-91, 2017
2062017
Concepts and limitations for learning developmental trajectories from single cell genomics
S Tritschler, M Büttner, DS Fischer, M Lange, V Bergen, H Lickert, ...
Development 146 (12), 2019
1792019
Spatial components of molecular tissue biology
G Palla, DS Fischer, A Regev, FJ Theis
Nature Biotechnology 40 (3), 308-318, 2022
1662022
Impulse model-based differential expression analysis of time course sequencing data
DS Fischer, FJ Theis, N Yosef
Nucleic acids research 46 (20), e119-e119, 2018
1112018
Inferring population dynamics from single-cell RNA-sequencing time series data
DS Fischer, AK Fiedler, EM Kernfeld, RMJ Genga, A Bastidas-Ponce, ...
Nature biotechnology 37 (4), 461-468, 2019
1102019
Modeling intercellular communication in tissues using spatial graphs of cells
DS Fischer, AC Schaar, FJ Theis
Nature Biotechnology, 1-5, 2022
92*2022
Predicting antigen specificity of single T cells based on TCR CDR 3 regions
DS Fischer, Y Wu, B Schubert, FJ Theis
Molecular systems biology 16 (8), e9416, 2020
882020
EpiScanpy: integrated single-cell epigenomic analysis
A Danese, ML Richter, K Chaichoompu, DS Fischer, FJ Theis, ...
Nature Communications 12 (1), 1-8, 2021
752021
Group testing for SARS-CoV-2 allows for up to 10-fold efficiency increase across realistic scenarios and testing strategies
CM Verdun, T Fuchs, P Harar, D Elbrächter, DS Fischer, J Berner, ...
Frontiers in Public Health 9, 583377, 2021
652021
MPRAnalyze: statistical framework for massively parallel reporter assays
T Ashuach, DS Fischer, A Kreimer, N Ahituv, FJ Theis, N Yosef
Genome biology 20, 1-17, 2019
642019
The scverse project provides a computational ecosystem for single-cell omics data analysis
I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ...
Nature biotechnology 41 (5), 604-606, 2023
552023
Cell-type-specific impact of glucocorticoid receptor activation on the developing brain: a cerebral organoid study
C Cruceanu, L Dony, AC Krontira, DS Fischer, S Roeh, R Di Giaimo, ...
American Journal of Psychiatry 179 (5), 375-387, 2022
50*2022
Graph representation learning for single-cell biology
L Hetzel, DS Fischer, S Günnemann, FJ Theis
Current Opinion in Systems Biology 28, 100347, 2021
322021
Toward modeling metabolic state from single-cell transcriptomics
K Hrovatin, DS Fischer, FJ Theis
Molecular Metabolism 57, 101396, 2022
312022
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’
DS Fischer, M Ansari, KI Wagner, S Jarosch, Y Huang, CH Mayr, M Strunz, ...
Nature Communications 12 (1), 1-14, 2021
302021
Sfaira accelerates data and model reuse in single cell genomics
DS Fischer, L Dony, M König, A Moeed, L Zappia, L Heumos, S Tritschler, ...
Genome Biology 22 (1), 1-21, 2021
272021
Asc-1 regulates white versus beige adipocyte fate in a subcutaneous stromal cell population
L Suwandhi, I Altun, R Karlina, V Miok, T Wiedemann, D Fischer, ...
Nature Communications 12 (1), 1588, 2021
202021
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Articles 1–20