David Sebastian Fischer
David Sebastian Fischer
PhD student Computational Biology and Machine Learning, Helmholtz Zentrum München, Germany
Verified email at helmholtz-muenchen.de - Homepage
Title
Cited by
Cited by
Year
Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and …
C Muus, MD Luecken, G Eraslan, A Waghray, G Heimberg, L Sikkema, ...
BioRxiv, 2020
1272020
Single cells make big data: new challenges and opportunities in transcriptomics
P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis
Current Opinion in Systems Biology 4, 85-91, 2017
922017
Concepts and limitations for learning developmental trajectories from single cell genomics
S Tritschler, M Büttner, DS Fischer, M Lange, V Bergen, H Lickert, ...
Development 146 (12), 2019
712019
Inferring population dynamics from single-cell RNA-sequencing time series data
DS Fischer, AK Fiedler, EM Kernfeld, RMJ Genga, A Bastidas-Ponce, ...
Nature biotechnology 37 (4), 461-468, 2019
382019
Impulse model-based differential expression analysis of time course sequencing data
DS Fischer, FJ Theis, N Yosef
Nucleic acids research 46 (20), e119-e119, 2018
352018
MPRAnalyze: statistical framework for massively parallel reporter assays
T Ashuach, DS Fischer, A Kreimer, N Ahituv, FJ Theis, N Yosef
Genome biology 20 (1), 1-17, 2019
192019
Group testing for SARS-CoV-2 allows for up to 10-fold efficiency increase across realistic scenarios and testing strategies
CM Verdun, T Fuchs, P Harar, D Elbrächter, DS Fischer, J Berner, ...
medRxiv, 2020
162020
Predicting antigen specificity of single T cells based on TCR CDR 3 regions
DS Fischer, Y Wu, B Schubert, FJ Theis
Molecular systems biology 16 (8), e9416, 2020
112020
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation
AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund, ...
bioRxiv, 2020
62020
epiScanpy: integrated single-cell epigenomic analysis
A Danese, ML Richter, DS Fischer, FJ Theis, M Colomé-Tatché
bioRxiv, 648097, 2019
42019
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature medicine, 1-14, 2021
32021
Identification and characterization of distinct brown adipocyte subtypes in C57BL/6J mice
R Karlina, D Lutter, V Miok, D Fischer, I Altun, T Schöttl, K Schorpp, ...
Life science alliance 4 (1), 2021
22021
Variational autoencoders with flexible priors enable robust distribution learning on single-cell RNA sequencing data
L Dony, M König, D Fischer, FJ Theis
ICML 2020 Workshop on Computational Biology (WCB) Proceedings Paper 37, 2020
22020
Cell-type specific impact of glucocorticoid receptor activation on the developing brain
C Cruceanu, L Dony, AC Krontira, DS Fischer, S Roeh, R Di Giaimo, ...
bioRxiv, 2020
22020
Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data
P Angerer, DS Fischer, FJ Theis, A Scialdone, C Marr
Bioinformatics 36 (15), 4291-4295, 2020
12020
Asc-1 regulates white versus beige adipocyte fate in a subcutaneous stromal cell population
L Suwandhi, I Altun, R Karlina, V Miok, T Wiedemann, D Fischer, ...
Nature Communications 12 (1), 1-12, 2021
2021
Squidpy: a scalable framework for spatial single cell analysis
G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ...
bioRxiv, 2021
2021
Learning Tn5 Sequence Bias from ATAC-seq on Naked Chromatin
M Ansari, DS Fischer, FJ Theis
International Conference on Artificial Neural Networks, 105-114, 2020
2020
Sfaira accelerates data and model reuse in single cell genomics
DS Fischer, L Dony, M König, A Moeed, L Zappia, S Tritschler, ...
bioRxiv, 2020
2020
Single-cell RNA sequencing reveals in vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’
DS Fischer, M Ansari, KI Wagner, S Jarosch, Y Huang, CH Mayr, M Strunz, ...
medRxiv, 2020
2020
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