| Single cells make big data: new challenges and opportunities in transcriptomics P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis Current Opinion in Systems Biology 4, 85-91, 2017 | 68 | 2017 |
| Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and … C Muus, MD Luecken, G Eraslan, A Waghray, G Heimberg, L Sikkema, ... BioRxiv, 2020 | 48 | 2020 |
| Concepts and limitations for learning developmental trajectories from single cell genomics S Tritschler, M Büttner, DS Fischer, M Lange, V Bergen, H Lickert, ... Development 146 (12), dev170506, 2019 | 43 | 2019 |
| Inferring population dynamics from single-cell RNA-sequencing time series data DS Fischer, AK Fiedler, EM Kernfeld, RMJ Genga, A Bastidas-Ponce, ... Nature biotechnology 37 (4), 461-468, 2019 | 23 | 2019 |
| Impulse model-based differential expression analysis of time course sequencing data DS Fischer, FJ Theis, N Yosef Nucleic acids research 46 (20), e119-e119, 2018 | 19 | 2018 |
| MPRAnalyze: statistical framework for massively parallel reporter assays T Ashuach, DS Fischer, A Kreimer, N Ahituv, FJ Theis, N Yosef Genome biology 20 (1), 1-17, 2019 | 11 | 2019 |
| Predicting antigen specificity of single T cells based on TCR CDR3 regions DS Fischer, Y Wu, B Schubert, FJ Theis Molecular Systems Biology 16 (8), 2020 | 5 | 2020 |
| Group testing for SARS-CoV-2 allows for up to 10-fold efficiency increase across realistic scenarios and testing strategies CM Verdun, T Fuchs, P Harar, D Elbrächter, DS Fischer, J Berner, ... medRxiv, 2020 | 4 | 2020 |
| epiScanpy: integrated single-cell epigenomic analysis A Danese, ML Richter, DS Fischer, FJ Theis, M Colomé-Tatché bioRxiv, 648097, 2019 | 3 | 2019 |
| Beyond pseudotime: Following T-cell maturation in single-cell RNAseq time series DS Fischer, AK Fiedler, E Kernfeld, RMJ Genga, J Hasenauer, R Maehr, ... bioRxiv, 219188, 2017 | 3 | 2017 |
| Automatic identification of relevant genes from low-dimensional embeddings of single cell RNAseq data P Angerer, DS Fischer, FJ Theis, A Scialdone, C Marr Bioinformatics, 2020 | | 2020 |
| Cell-type specific impact of glucocorticoid receptor activation on the developing brain C Cruceanu, L Dony, AC Krontira, DS Fischer, S Roeh, R Di Giaimo, ... bioRxiv, 2020 | | 2020 |
| Brain organoids as models of the developing human brain: deciphering the molecular signature of prenatal stress C Cruceanu, L Dony, AC Kontira, D Fischer, S Roeh, R DiGiaimo, ... Elsevier, 2019 | | 2019 |
| Variational autoencoders with flexible priors enable robust distribution learning on single-cell RNA sequencing data L Dony, M König, DS Fischer, FJ Theis | | |
Fabian J TheisHelmholtz Zentrum München, GermanyVerified email at helmholtz-muenchen.de
