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David Sebastian Fischer
David Sebastian Fischer
Helmholtz Zentrum Munich, Technical University of Munich
Verified email at helmholtz-muenchen.de - Homepage
Title
Cited by
Cited by
Year
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature medicine 27 (3), 546-559, 2021
350*2021
Single cells make big data: new challenges and opportunities in transcriptomics
P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis
Current Opinion in Systems Biology 4, 85-91, 2017
1452017
Concepts and limitations for learning developmental trajectories from single cell genomics
S Tritschler, M Büttner, DS Fischer, M Lange, V Bergen, H Lickert, ...
Development 146 (12), 2019
1192019
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation
AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund, ...
Molecular Systems Biology 18 (3), e10798, 2022
902022
Inferring population dynamics from single-cell RNA-sequencing time series data
DS Fischer, AK Fiedler, EM Kernfeld, RMJ Genga, A Bastidas-Ponce, ...
Nature biotechnology 37 (4), 461-468, 2019
742019
Impulse model-based differential expression analysis of time course sequencing data
DS Fischer, FJ Theis, N Yosef
Nucleic acids research 46 (20), e119-e119, 2018
702018
Squidpy: a scalable framework for spatial omics analysis
G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ...
Nature Methods, 1-8, 2022
562022
Group testing for SARS-CoV-2 allows for up to 10-fold efficiency increase across realistic scenarios and testing strategies
CM Verdun, T Fuchs, P Harar, D Elbrächter, DS Fischer, J Berner, ...
Frontiers in Public Health, 1205, 2021
372021
Predicting antigen specificity of single T cells based on TCR CDR 3 regions
DS Fischer, Y Wu, B Schubert, FJ Theis
Molecular systems biology 16 (8), e9416, 2020
372020
MPRAnalyze: statistical framework for massively parallel reporter assays
T Ashuach, DS Fischer, A Kreimer, N Ahituv, FJ Theis, N Yosef
Genome biology 20 (1), 1-17, 2019
312019
EpiScanpy: integrated single-cell epigenomic analysis
A Danese, ML Richter, K Chaichoompu, DS Fischer, FJ Theis, ...
Nature Communications 12 (1), 1-8, 2021
222021
Spatial components of molecular tissue biology
G Palla, DS Fischer, A Regev, FJ Theis
Nature Biotechnology 40 (3), 308-318, 2022
172022
Cell-type-specific impact of glucocorticoid receptor activation on the developing brain: a cerebral organoid study
C Cruceanu, L Dony, AC Krontira, DS Fischer, S Roeh, R Di Giaimo, ...
American Journal of Psychiatry 179 (5), 375-387, 2022
15*2022
Sfaira accelerates data and model reuse in single cell genomics
DS Fischer, L Dony, M König, A Moeed, L Zappia, L Heumos, S Tritschler, ...
Genome Biology 22 (1), 1-21, 2021
112021
Asc-1 regulates white versus beige adipocyte fate in a subcutaneous stromal cell population
L Suwandhi, I Altun, R Karlina, V Miok, T Wiedemann, D Fischer, ...
Nature Communications 12 (1), 1-12, 2021
102021
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’
DS Fischer, M Ansari, KI Wagner, S Jarosch, Y Huang, CH Mayr, M Strunz, ...
Nature Communications 12 (1), 1-14, 2021
82021
Identification and characterization of distinct brown adipocyte subtypes in C57BL/6J mice
R Karlina, D Lutter, V Miok, D Fischer, I Altun, T Schöttl, K Schorpp, ...
Life science alliance 4 (1), 2021
82021
Graph representation learning for single-cell biology
L Hetzel, DS Fischer, S Günnemann, FJ Theis
Current Opinion in Systems Biology 28, 100347, 2021
72021
Learning cell communication from spatial graphs of cells
DS Fischer, AC Schaar, FJ Theis
bioRxiv, 2021
72021
Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data
P Angerer, DS Fischer, FJ Theis, A Scialdone, C Marr
Bioinformatics 36 (15), 4291-4295, 2020
62020
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