Jean-Philippe Vert

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Citations	23429	12431
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laurent jacobCNRS, Sorbonne UniversitéVerified email at cnrs.fr
Francis BachInria - Ecole Normale SupérieureVerified email at inria.fr
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Emmanuel BarillotInstitut Curie, INSERM, Mines ParisTech, U900Verified email at curie.fr
Tatsuya AkutsuProfessor, Bioinformatics Center, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Nelle VaroquauxCNRS, Université Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Marco CuturiApple / CREST-ENSAE.Verified email at apple.com
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems & ELLIS Institute Tübingen; Professor at ETHVerified email at tuebingen.mpg.de
Pierre MahébioMérieuxVerified email at biomerieux.com
Koji TsudaProfessor, GSFS, The University of TokyoVerified email at k.u-tokyo.ac.jp
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Andrei ZinovyevIn silico R&D Evotec, Institut Curie, PRAIRIEVerified email at evotec.com
kevin bleakleyINRIA, FranceVerified email at inria.fr
Hiroto SaigoKyushu UniversityVerified email at inf.kyushu-u.ac.jp
Yoshihiro YamanishiNagoya UniversityVerified email at i.nagoya-u.ac.jp
Mikhail ZaslavskiyVerified email at ensmp.fr
Valentina BoevaAssistant Prof., ETH Zürich, Department of Computer ScienceVerified email at inf.ethz.ch
Nicolas ServantInstitut CurieVerified email at curie.fr
Fanny PerraudeauBain & CompanyVerified email at bain.com
Sandrine DudoitDivision of Biostatistics and Department of Statistics, University of California, BerkeleyVerified email at stat.berkeley.edu

Jean-Philippe Vert

Owkin / PSL University

Verified email at owkin.com - Homepage

machine learning computational biology statistics bioinformatics artificial intelligence


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Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1749	2012
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ... Genome biology 16 (1), 1-11, 2015	1555	2015
Group lasso with overlap and graph lasso L Jacob, G Obozinski, JP Vert Proceedings of the 26th annual international conference on machine learning …, 2009	1116	2009
Kernel methods in computational biology B Schölkopf, K Tsuda, JPV Vert MIT press, 2004	1049	2004
A community effort to assess and improve drug sensitivity prediction algorithms Nature Biotechnology 32, 1202-1212, 2014	718	2014
A general and flexible method for signal extraction from single-cell RNA-seq data D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert Nature communications 9 (1), 284, 2018	592	2018
A primer on kernel methods JP Vert, K Tsuda, B Schölkopf Kernel Methods in Computational Biology, 35-70, 2004	581	2004
Consistency of random forests E Scornet, G Biau, JP Vert Annals of Statistics 43 (4), 1716-1741, 2015	574	2015
Clustered multitask learning: A convex relaxation L Jacob, F Bach, JP Vert Advances in Neural Information Processing Systems 21, 2009	568*	2009
Protein homology detection using string alignment kernels H Saigo, JP Vert, N Ueda, T Akutsu Bioinformatics 20 (11), 1682-1689, 2004	500	2004
The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures AC Haury, P Gestraud, JP Vert PloS one 6 (12), e28210, 2011	462	2011
A path following algorithm for the graph matching problem M Zaslavskiy, F Bach, JP Vert IEEE Transactions on Pattern Analysis and Machine Intelligence 31 (12), 2227 …, 2008	458	2008
TIGRESS: trustful inference of gene regulation using stability selection AC Haury, F Mordelet, P Vera-Licona, JP Vert BMC systems biology 6 (1), 1-17, 2012	441	2012
Protein-ligand interaction prediction: an improved chemogenomics approach L Jacob, JP Vert bioinformatics 24 (19), 2149-2156, 2008	411	2008
An accurate and interpretable model for siRNA efficacy prediction JP Vert, N Foveau, C Lajaunie, Y Vandenbrouck BMC bioinformatics 7 (1), 1-17, 2006	340	2006
Classification of microarray data using gene networks F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert BMC bioinformatics 8, 1-15, 2007	331	2007
Clusterpath an algorithm for clustering using convex fusion penalties TD Hocking, A Joulin, F Bach, JP Vert 28th international conference on machine learning, 1, 2011	320	2011
Protein network inference from multiple genomic data: a supervised approach Y Yamanishi, JP Vert, M Kanehisa Bioinformatics 20 (suppl_1), i363-i370, 2004	311	2004
A bagging SVM to learn from positive and unlabeled examples F Mordelet, JP Vert Pattern Recognition Letters 37, 201-209, 2014	310	2014
Graph kernels based on tree patterns for molecules P Mahé, JP Vert Machine learning 75 (1), 3-35, 2009	305	2009

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