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Srivatsan Raman
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Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8
E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009
14092009
Structure prediction for CASP8 with all‐atom refinement using Rosetta
S Raman, R Vernon, J Thompson, M Tyka, R Sadreyev, J Pei, D Kim, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 89-99, 2009
5872009
Tracking public and private responses to the COVID-19 epidemic: evidence from state and local government actions
S Gupta, T Nguyen, S Raman, B Lee, F Lozano-Rojas, A Bento, K Simon, ...
American Journal of Health Economics 7 (4), 361-404, 2021
3872021
High-resolution structure prediction and the crystallographic phase problem
B Qian, S Raman, R Das, P Bradley, AJ McCoy, RJ Read, D Baker
Nature 450 (7167), 259-264, 2007
3842007
Engineering an allosteric transcription factor to respond to new ligands
ND Taylor, AS Garruss, R Moretti, S Chan, MA Arbing, D Cascio, ...
Nature methods 13 (2), 177-183, 2016
3082016
Evolution-guided optimization of biosynthetic pathways
S Raman, JK Rogers, ND Taylor, GM Church
Proceedings of the National Academy of Sciences 111 (50), 17803-17808, 2014
3082014
NMR structure determination for larger proteins using backbone-only data
S Raman, OF Lange, P Rossi, M Tyka, X Wang, J Aramini, G Liu, ...
Science 327 (5968), 1014-1018, 2010
3072010
Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home
R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007
2722007
Synthetic biosensors for precise gene control and real-time monitoring of metabolites
JK Rogers, CD Guzman, ND Taylor, S Raman, K Anderson, GM Church
Nucleic acids research 43 (15), 7648-7660, 2015
2302015
Engineering allostery
S Raman, N Taylor, N Genuth, S Fields, GM Church
Trends in Genetics 30 (12), 521-528, 2014
772014
CASD-NMR: critical assessment of automated structure determination by NMR
A Rosato, A Bagaria, D Baker, B Bardiaux, A Cavalli, JF Doreleijers, ...
Nature methods 6 (9), 625-626, 2009
732009
Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study
TA Ramelot, S Raman, AP Kuzin, R Xiao, LC Ma, TB Acton, JF Hunt, ...
Proteins: Structure, Function, and Bioinformatics 75 (1), 147-167, 2009
712009
Functional plasticity and evolutionary adaptation of allosteric regulation
M Leander, Y Yuan, A Meger, Q Cui, S Raman
Proceedings of the National Academy of Sciences 117 (41), 25445-25454, 2020
642020
Accurate automated protein NMR structure determination using unassigned NOESY data
S Raman, YJ Huang, B Mao, P Rossi, JM Aramini, G Liu, GT Montelione, ...
Journal of the American Chemical Society 132 (1), 202-207, 2010
602010
Computation-guided optimization of split protein systems
TB Dolberg, AT Meger, JD Boucher, WK Corcoran, EE Schauer, ...
Nature chemical biology 17 (5), 531-539, 2021
592021
Design of a transcriptional biosensor for the portable, on-demand detection of cyanuric acid
X Liu, AD Silverman, KK Alam, E Iverson, JB Lucks, MC Jewett, S Raman
ACS synthetic biology 9 (1), 84-94, 2019
552019
A regulatory NADH/NAD+ redox biosensor for bacteria
Y Liu, R Landick, S Raman
ACS Synthetic Biology 8 (2), 264-273, 2019
472019
Virus-associated organosulfur metabolism in human and environmental systems
K Kieft, AM Breister, P Huss, AM Linz, E Zanetakos, Z Zhou, J Rahlff, ...
Cell reports 36 (5), 2021
462021
De novo design of programmable inducible promoters
X Liu, STP Gupta, D Bhimsaria, JL Reed, JA Rodríguez-Martínez, ...
Nucleic Acids Research 47 (19), 10452-10463, 2019
402019
Engineered bacteriophages as programmable biocontrol agents
P Huss, S Raman
Current opinion in biotechnology 61, 116-121, 2020
372020
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Articles 1–20