Agnieszka Rybarczyk

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Jacek BlazewiczProfesor informatyki, Politechnika PoznanskaVerified email at cs.put.poznan.pl
Marcin RadomPoznan University of Technology, Institute of Computing ScienceVerified email at cs.put.poznan.pl
Marta SzachniukInstitute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Natalia SzóstakInstitute of Bioorganic Chemistry Polish Academy of SciencesVerified email at ibch.poznan.pl
Tomasz ZokPoznan University of TechnologyVerified email at cs.put.poznan.pl
Maciej AntczakAssistant Professor at Institute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Zofia Szweykowska-KulinskaAdam Mickiewicz UniversityVerified email at amu.edu.pl
Marta KasprzakPoznan University of Technology, Institute of Computing ScienceVerified email at put.poznan.pl
Agnieszka Żmieńko1) Institute of Bioorganic Chemistry PAS; 2) Institute of Computing Science PUT, PolandVerified email at ibch.poznan.pl
Falcon-PerezCIC bioGUNEVerified email at cicbiogune.es
Mariusz PopendaDr chemii, PANVerified email at ibch.poznan.pl
Renzo KottmannSenatorin für FinanzenVerified email at finanzen.bremen.de
Piotr FormanowiczAssociate Professor at Institute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Prof. Dr. Frank Oliver GlöcknerAlfred Wegener Institute Bremerhaven, MARUM, University of Bremen, Jacobs UniversityVerified email at awi.de
Ireneusz J. OdrzykoskiAdam Mickiewicz University, Poznan, PolandVerified email at amu.edu.pl
Dietrich Rebholz-SchuhmannZB MED -- Information Center for Life SciencesVerified email at zbmed.de
Paweł WojciechowskiInstitute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl

Agnieszka Rybarczyk

Poznan University of Techmology; Gdynia Maritime University

Verified email at cs.put.poznan.pl

computational biology


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Sorting signal targeting mRNA into hepatic extracellular vesicles N Szostak, F Royo, A Rybarczyk, M Szachniuk, J Blazewicz, A del Sol, ... RNA biology 11 (7), 836-844, 2014	32	2014
New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC bioinformatics 16 (1), 1-12, 2015	30	2015
The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis–modeled and analyzed using a Petri net-based approach D Formanowicz, M Radom, A Rybarczyk, P Formanowicz Biosystems 165, 71-87, 2018	29	2018
Organellar inheritance in the allopolyploid moss Rhizomnium pseudopunctatum K Jankowiak, A Rybarczyk, R Wyatt, I Odrzykoski, A Pacak, ... Taxon 54 (2), 383-388, 2005	22	2005
AmiRNA Designer-new method of artificial miRNA design. A Mickiewicz, A Rybarczyk, J Sarzynska, M Figlerowicz, J Blazewicz Acta Biochimica Polonica 63 (1), 71-77, 2016	20	2016
Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems M Radom, A Rybarczyk, B Szawulak, H Andrzejewski, P Chabelski, ... Bioinformatics 33 (23), 3822-3823, 2017	16	2017
2D-PAGE as an effective method of RNA degradome analysis M Nowacka, P Jackowiak, A Rybarczyk, T Magacz, PM Strozycki, ... Molecular biology reports 39 (1), 139-146, 2012	14	2012
A Role of Inflammation and Immunity in Essential Hypertension—Modeled and Analyzed Using Petri Nets D Formanowicz, A Rybarczyk, M Radom, P Formanowicz International Journal of Molecular Sciences 21 (9), 3348, 2020	11	2020
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs M Antczak, M Zablocki, T Zok, A Rybarczyk, J Blazewicz, M Szachniuk Bioinformatics 10, 2018	11	2018
Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA A Mickiewicz, J Sarzyńska, M Miłostan, A Kurzyńska-Kokorniak, ... Computational biology and chemistry 66, 44-56, 2017	11	2017
RNA partial degradation problem: motivation, complexity, algorithm J Blazewicz, M Figlerowicz, M Kasprzak, M Nowacka, A Rybarczyk Journal of Computational Biology 18 (6), 821-834, 2011	11	2011
A COMPARISON OF GROUP II INTRONS OF PLASTID tRNA^ L^ y^ s~ U~ U~ U GENES ENCODING MATURASE PROTEIN K Jankowiak, J Lesicka, A Pacak, A Rybarczyk, Z Szweykowska-Kulinska CELLULAR AND MOLECULAR BIOLOGY LETTERS. 9 (2), 239-252, 2004	11	2004
RNA-Seq-based analysis of differential gene expression associated with hepatitis C virus infection in cell culture A Hojka-Osinska, L Budzko, A Zmienko, A Rybarczyk, P Maillard, ... Acta Biochimica Polonica 63 (4), 789-798, 2016	9	2016
Poseidon: An information retrieval and extraction system for metagenomic marine science M Radom, A Rybarczyk, R Kottmann, P Formanowicz, M Szachniuk, ... Ecological Informatics 12, 10-15, 2012	9	2012
Translational and structural analysis of the shortest legume ENOD40 gene in Lupinus luteus. J Podkowinski, A Zmienko, B Florek, P Wojciechowski, A Rybarczyk, ... Acta Biochimica Polonica 56 (1), 2009	9	2009
A Stochastic Petri Net-Based Model of the Involvement of Interleukin 18 in Atherosclerosis D Formanowicz, A Rybarczyk, M Radom, K Tanaś, P Formanowicz International journal of molecular sciences 21 (22), 8574, 2020	4	2020
Tabu search for the RNA partial degradation problem A Rybarczyk, A Hertz, M Kasprzak, J Blazewicz International Journal of Applied Mathematics and Computer Science 27 (2 …, 2017	4	2017
Computational prediction of nonenzymatic RNA degradation patterns A Rybarczyk, P Jackowiak, M Figlerowicz, J Blazewicz Acta Biochimica Polonica 63 (4), 745-751, 2016	4	2016
Multi-agent approach to sequence structure simulation in the RNA World hypothesis J Synak, A Rybarczyk, J Blazewicz Plos one 15 (8), e0238253, 2020	3	2020
Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets D Formanowicz, A Rybarczyk, P Formanowicz Fundamenta Informaticae 160 (1-2), 143-165, 2018	3	2018

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