Khalid Kunji
Khalid Kunji
Hamad Bin Khalifa University, Qatar Computing Research Institute
E-mailová adresa ověřena na:
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
DeepSol: a deep learning framework for sequence-based protein solubility prediction
S Khurana, R Rawi, K Kunji, GY Chuang, H Bensmail, R Mall
Bioinformatics 34 (15), 2605-2613, 2018
PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine
R Rawi, R Mall, K Kunji, CH Shen, PD Kwong, GY Chuang
Bioinformatics 34 (7), 1092-1098, 2018
RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes
R Mall, L Cerulo, L Garofano, V Frattini, K Kunji, H Bensmail, TS Sabedot, ...
Nucleic acids research 46 (7), e39-e39, 2018
DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction
A Elbasir, B Moovarkumudalvan, K Kunji, PR Kolatkar, H Bensmail, R Mall
Bioinformatics., 2018
BCrystal: an interpretable sequence-based protein crystallization predictor
A Elbasir, R Mall, K Kunji, R Rawi, Z Islam, GY Chuang, PR Kolatkar, ...
Bioinformatics 36 (5), 1429-1438, 2020
Comparison and assessment of family-and population-based genotype imputation methods in large pedigrees
E Ullah, R Mall, MM Abbas, K Kunji, AQ Nato, H Bensmail, EM Wijsman, ...
Genome research 29 (1), 125-134, 2019
Genetic predisposition to cancer across people of different ancestries in Qatar: a population-based, cohort study
M Saad, Y Mokrab, N Halabi, J Shan, R Razali, K Kunji, N Syed, ...
The Lancet Oncology 23 (3), 341-352, 2022
Differential Community Detection in Paired Biological Networks
R Mall, E Ullah, K Kunji, F D'Angelo, H Bensmail, M Ceccarelli
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
Network-based identification of key master regulators associated with an immune-silent cancer phenotype
R Mall, M Saad, J Roelands, D Rinchai, K Kunji, H Almeer, W Hendrickx, ...
Briefings in bioinformatics 22 (6), bbab168, 2021
An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity
R Mall, E Ullah, K Kunji, M Ceccarelli, H Bensmail
F1000Research 7, 378, 2018
Coevolution analysis of HIV-1 envelope glycoprotein complex
R Rawi, K Kunji, A Haoudi, H Bensmail
PLoS One 10 (11), e0143245, 2015
COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator
R Rawi, R Mall, K Kunji, M El Anbari, M Aupetit, E Ullah, H Bensmail
BMC bioinformatics 17, 1-9, 2016
Validation of polygenic risk scores for Coronary Heart Disease in a Middle Eastern Cohort using whole genome sequencing
M Saad, A El-Menyar, K Kunji, E Ullah, J Al Suwaidi, IJ Kullo
Circulation: Genomic and Precision Medicine 15 (6), e003712, 2022
Untargeted metabolomics profiling reveals perturbations in Arginine-NO metabolism in middle eastern patients with coronary heart disease
E Ullah, A El-Menyar, K Kunji, R Elsousy, HRB Mokhtar, E Ahmad, ...
Metabolites 12 (6), 517, 2022
Whole genome sequencing of a middle eastern cohort replicates known loci for coronary heart disease and identifies potential novel ones
K Kunji, A El-Menyar, E Ullah, I Kullo, M Saad, J Al Suwaidi
Journal of the American College of Cardiology 77 (18_Supplement_1), 13-13, 2021
GIGI-Quick: a fast approach to impute missing genotypes in genome-wide association family data
K Kunji, E Ullah, AQ Nato Jr, EM Wijsman, M Saad
Bioinformatics 34 (9), 1591-1593, 2018
An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity
R Mall, E Ullah, K Kunji, H Bensmail, M Ceccarelli
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017
Analytic pipelines to assess the relationship between immune response and germline genetics in human tumors
RW Sayaman, M Saad, C Heimann, D Hu, K Kunji, J Roelands, DM Wolf, ...
STAR protocols 3 (4), 101809, 2022
GIGI2: A fast approach for parallel genotype imputation in large pedigrees
E Ullah, K Kunji, EM Wijsman, M Saad
bioRxiv, 533687, 2019
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Články 1–20