Boris Kholodenko

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Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Anatoly KiyatkinYale UniversityVerified email at yale.edu
Marc BirtwistleClemson UniversityVerified email at clemson.edu
Marta CascanteUniversitat de BarcelonaVerified email at ub.edu
Dirk FeySystems Biology Ireland, University College DublinVerified email at ucd.ie
Nikolai Markevich, PhDThe Institute of Theoretical and Experimental Biophysics RAS, PushchinoVerified email at iteb.ru
Frank J BruggemanProfessor, VU UniversityVerified email at vu.nl
Babatunde OgunnaikeWilliam L. Friend Chaired Professor of Chemical Engineering, University of DelawareVerified email at udel.edu
von KriegsheimUniversity of EdinburghVerified email at IGMM.ed.ac.uk
Melinda HalaszAssistant Professor, UCD School of MedicineVerified email at ucd.ie
David MatallanasUniversity College Dublin, Systems Biology Ireland and School of MedicineVerified email at ucd.ie
Eduardo SontagNortheastern University ECE and BioEVerified email at northeastern.edu
Maciej DobrzyńskiInstitute of Cell Biology, University of BernVerified email at izb.unibe.ch
M A TsyganovPh.D., D.Sc., The Institute of Theoretical and Experimental Biophysics of the Russian Academy ofVerified email at iteb.ru
Jens RauchAssistant Professor and Group Leader, Systems Biology Ireland, University College DublinVerified email at ucd.ie
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Nils BlüthgenComputational Modelling in Medicine - Charité - IRI Life SciencesVerified email at sys-bio.net
John F HancockUniversity of Texas Medial School at HoustonVerified email at uth.tmc.edu
Hanspeter HerzelInstitute for Theoretical BiologyVerified email at biologie.hu-berlin.de
Julio Saez RodriguezHeidelberg UniversityVerified email at bioquant.uni-heidelberg.de

Boris Kholodenko

Professor of Systems Biology, University College Dublin

Verified email at ucd.ie - Homepage

Systems Biology Signal Transduction Computational and Mathematical Modelling


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Cell-signalling dynamics in time and space BN Kholodenko Nature reviews Molecular cell biology 7 (3), 165-176, 2006	1482	2006
Negative feedback and ultrasensitivity can bring about oscillations in the mitogen‐activated protein kinase cascades BN Kholodenko European journal of biochemistry 267 (6), 1583-1588, 2000	808	2000
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades NI Markevich, JB Hoek, BN Kholodenko The Journal of cell biology 164 (3), 353-359, 2004	787	2004
Quantification of short term signaling by the epidermal growth factor receptor BN Kholodenko, OV Demin, G Moehren, JB Hoek Journal of Biological Chemistry 274 (42), 30169-30181, 1999	769	1999
Signalling ballet in space and time BN Kholodenko, JF Hancock, W Kolch Nature reviews Molecular cell biology 11 (6), 414-426, 2010	647	2010
Cross-talk between mitogenic Ras/MAPK and survival PI3K/Akt pathways: a fine balance E Aksamitiene, A Kiyatkin, BN Kholodenko Biochemical Society Transactions 40 (1), 139-146, 2012	474	2012
Untangling the wires: a strategy to trace functional interactions in signaling and gene networks BN Kholodenko, A Kiyatkin, FJ Bruggeman, E Sontag, HV Westerhoff, ... Proceedings of the National Academy of Sciences 99 (20), 12841-12846, 2002	470	2002
The dynamic control of signal transduction networks in cancer cells W Kolch, M Halasz, M Granovskaya, BN Kholodenko Nature Reviews Cancer 15 (9), 515-527, 2015	285	2015
Ligand‐dependent responses of the ErbB signaling network: experimental and modeling analyses MR Birtwistle, M Hatakeyama, N Yumoto, BA Ogunnaike, JB Hoek, ... Molecular systems biology 3 (1), 144, 2007	282	2007
Quantitative analysis of signaling networks HM Sauro, BN Kholodenko Progress in biophysics and molecular biology 86 (1), 5-43, 2004	278	2004
The mammalian MAPK/ERK pathway exhibits properties of a negative feedback amplifier W Sturm, O. E., Orton, R., Grindlay, J., Birtwistle, M., Vyshemirsky, V ... Sci Signal 3 (153), ra90, 2010	268	2010
Why cytoplasmic signalling proteins should be recruited to cell membranes BN Kholodenko, JB Hoek, HV Westerhoff Trends in cell biology 10 (5), 173-178, 2000	265	2000
Systems‐level interactions between insulin–EGF networks amplify mitogenic signaling N Borisov, E Aksamitiene, A Kiyatkin, S Legewie, J Berkhout, T Maiwald, ... Molecular systems biology 5 (1), 256, 2009	253	2009
Spatial gradients of cellular phospho-proteins GC Brown, BN Kholodenko FEBS letters 457 (3), 452-454, 1999	245	1999
Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics T Nakakuki, MR Birtwistle, Y Saeki, N Yumoto, K Ide, T Nagashima, ... Cell 141 (5), 884-896, 2010	236	2010
Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data E Sontag, A Kiyatkin, BN Kholodenko Bioinformatics 20 (12), 1877-1886, 2004	213	2004
Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors BN Kholodenko Journal of Experimental Biology 206 (12), 2073-2082, 2003	205	2003
Scaffolding protein Grb2-associated binder 1 sustains epidermal growth factor-induced mitogenic and survival signaling by multiple positive feedback loops A Kiyatkin, E Aksamitiene, NI Markevich, NM Borisov, JB Hoek, ... Journal of biological chemistry 281 (29), 19925-19938, 2006	203	2006
Quantification of information transfer via cellular signal transduction pathways BN Kholodenko, JB Hoek, HV Westerhoff, GC Brown FEBS letters 414 (2), 430-434, 1997	192	1997
Computational approaches for analyzing information flow in biological networks W Kholodenko, B., Yaffe, M. B. & Kolch Sci. Signal. 5, re1, 2012	188	2012

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