| PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský PLoS computational biology 12 (5), e1004962, 2016 | 160 | 2016 |
| FireProt: web server for automated design of thermostable proteins M Musil, J Stourac, J Bendl, J Brezovsky, Z Prokop, J Zendulka, ... Nucleic acids research 45 (W1), W393-W399, 2017 | 105 | 2017 |
| Computational design of stable and soluble biocatalysts M Musil, H Konegger, J Hon, D Bednar, J Damborsky Acs Catalysis 9 (2), 1033-1054, 2018 | 88 | 2018 |
| HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering J Bendl, J Stourac, E Sebestova, O Vavra, M Musil, J Brezovsky, ... Nucleic acids research 44 (W1), W479-W487, 2016 | 87 | 2016 |
| FireProtDB: database of manually curated protein stability data J Stourac, J Dubrava, M Musil, J Horackova, J Damborsky, S Mazurenko, ... Nucleic acids research 49 (D1), D319-D324, 2021 | 47 | 2021 |
| Computational design of enzymes for biotechnological applications J Planas-Iglesias, SM Marques, GP Pinto, M Musil, J Stourac, ... Biotechnology advances 47, 107696, 2021 | 46 | 2021 |
| FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction M Musil, RT Khan, A Beier, J Stourac, H Konegger, J Damborsky, ... Briefings in bioinformatics 22 (4), bbaa337, 2021 | 34 | 2021 |
| Evolutionary analysis as a powerful complement to energy calculations for protein stabilization K Beerens, S Mazurenko, A Kunka, SM Marques, N Hansen, M Musil, ... ACS Catalysis 8 (10), 9420-9428, 2018 | 22 | 2018 |
| Fully Automated Ancestral Sequence Reconstruction using FireProtASR RT Khan, M Musil, J Stourac, J Damborsky, D Bednar Current Protocols 1 (2), e30, 2021 | 12 | 2021 |
| Deep insights into the specific evolution of fungal hybrid B heme peroxidases M Zámocký, M Musil, M Danchenko, P Ferianc, K Chovanová, P Baráth, ... Biology 11 (3), 459, 2022 | 3 | 2022 |
| SoluProtMutDB: A manually curated database of protein solubility changes upon mutations J Velecký, M Hamsikova, J Stourac, M Musil, J Damborsky, D Bednar, ... Computational and Structural Biotechnology Journal 20, 6339-6347, 2022 | 2 | 2022 |
| Caver Web 1.2 M Musil, A Ježík, M Hamšíková, J Štourač, J Galgonek, D Bednář, ... | | 2022 |
| Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web M Musil, A Jezik, M Jankujova, J Stourac, J Galgonek, SM Eyrilmez, ... Computational and Structural Biotechnology Journal 20, 6512-6518, 2022 | | 2022 |
| FireProt ASR: Automated design of ancestral proteins Z Prokop, M Musil, R Tariq Khan, A Beier, J Stourac, J Damborsky, ... | | 2022 |
| Deep Insights into the Specific Evolution of Fungal Hybrid B Heme Peroxidases. Biology 2022, 11, 459 M Zámocký, M Musil, M Danchenko, P Ferianc, K Chovanová, P Baráth, ... s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2022 | | 2022 |
| FireProt (DB): database of manually curated protein stability data J Štourač, J Dubrava, M Musil, J Horáčková, J Damborský, S Mazurenko, ... Nucleic Acids Research, 2021 | | 2021 |
| Computational enzyme design for metabolic engineering J Damborský, D Bednář, Z Prokop, M Marek, S Mazurenko, J Štourač, ... | | 2021 |
| Strategies and software tools for engineering protein tunnels and dynamical gates J Damborsky, D Bednar, S Marques, P Kokkonen, G Pinto, ... | | 2019 |
| Design and evolution of gated protein tunnels J Damborsky, D Bendar, S Marques, P Kokkonen, M Musil, J Stourac, ... ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017 | | 2017 |
| FireProt 1.0 M Musil, J Štourač, J Bendl, J Brezovský, Z Prokop, J Zendulka, ... | | 2017 |
