Jose Colmenares
Jose Colmenares
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Between algorithm and model: different molecular surface definitions for the Poisson-Boltzmann based electrostatic characterization of biomolecules in solution
S Decherchi, J Colmenares, CE Catalano, M Spagnuolo, E Alexov, ...
Communications in computational physics 13 (1), 61-89, 2013
GPU linear and non-linear Poisson–Boltzmann solver module for DelPhi
J Colmenares, J Ortiz, W Rocchia
Bioinformatics 30 (4), 569-570, 2014
A combined MPI-CUDA parallel solution of linear and nonlinear Poisson-Boltzmann equation
J Colmenares, A Galizia, J Ortiz, A Clematis, W Rocchia
BioMed research international 2014, 2014
Solving the Linearized Poisson-Boltzmann Equation on GPUs using CUDA
J Colmenares, J Ortiz, S Decherchi, A Fijany, W Rocchia
Parallel, Distributed and Network-Based Processing (PDP), 2013 21st …, 2013
Cuda accelerated blobby molecular surface generation
D D’Agostino, S Decherchi, A Galizia, J Colmenares, A Quarati, ...
Parallel Processing and Applied Mathematics, 347-356, 2012
Pore-scale modelling of electrical phenomena in porous media with implications for induced polarization and self-potential methods
JB Colmenares
Estimation of Solvation Electrostatic Free Energy of Biomolecular Systems by Numerical Solution of the Poisson–Boltzmann Equation
J Colmenares, S Decherchi, W Rocchia
Electrostatics of Soft and Disordered Matter, 299, 2014
CUDA Accelerated Blobby Molecular Surface GenerationParallel Processing and Applied Mathematics
A Quarati, J Colmenares, A Galizia, W Rocchia, S Decherchi, ...
Springer Berlin Heidelberg 7203, 347-356, 2012
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