Paolo Manghi
Paolo Manghi
PhD, computational metagenomics lab, Dep. of Cellular, Computational and Integrative Biology
Verified email at
Cited by
Cited by
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
elife 10, e65088, 2021
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 2500, 2020
Accessible, curated metagenomic data through ExperimentHub
E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ...
Nature methods 14 (11), 1023-1024, 2017
The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations
A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ...
Cell host & microbe 26 (5), 666-679. e7, 2019
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ...
Nature Biotechnology 41 (11), 1633-1644, 2023
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ...
Nature medicine 28 (3), 535-544, 2022
The person-to-person transmission landscape of the gut and oral microbiomes
M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ...
Nature 614 (7946), 125-135, 2023
Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases
G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ...
Nature Medicine 28 (9), 1913-1923, 2022
Detecting contamination in viromes using ViromeQC
M Zolfo, F Pinto, F Asnicar, P Manghi, A Tett, FD Bushman, N Segata
Nature biotechnology 37 (12), 1408-1412, 2019
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ...
Genome biology 21, 1-27, 2020
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ...
Genome biology 22 (1), 209, 2021
Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics
P Ghensi, P Manghi, M Zolfo, F Armanini, E Pasolli, M Bolzan, A Bertelle, ...
npj Biofilms and Microbiomes 6 (1), 47, 2020
Altered fecal small RNA profiles in colorectal cancer reflect gut microbiome composition in stool samples
S Tarallo, G Ferrero, G Gallo, A Francavilla, G Clerico, A Realis Luc, ...
Msystems 4 (5), 10.1128/msystems. 00289-19, 2019
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ...
Genome biology 20, 1-16, 2019
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. Nat Commun 11: 2500
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Profiling microbial strains in urban environments using metagenomic sequencing data
M Zolfo, F Asnicar, P Manghi, E Pasolli, A Tett, N Segata
Biology direct 13, 1-13, 2018
Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter
L Granehäll, KD Huang, A Tett, P Manghi, A Paladin, N O’Sullivan, ...
Microbiome 9, 1-18, 2021
The system can't perform the operation now. Try again later.
Articles 1–20