Siavash Mirarab
Title
Cited by
Cited by
Year
Whole-genome analyses resolve early branches in the tree of life of modern birds
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346 (6215), 1320-1331, 2014
15012014
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
11832017
Phylotranscriptomic analysis of the origin and early diversification of land plants
NJ Wickett, S Mirarab, N Nguyen, T Warnow, E Carpenter, N Matasci, ...
Proceedings of the National Academy of Sciences 111 (45), E4859-E4868, 2014
9282014
ASTRAL: genome-scale coalescent-based species tree estimation
S Mirarab, R Reaz, MS Bayzid, T Zimmermann, MS Swenson, T Warnow
Bioinformatics 30 (17), i541-i548, 2014
7842014
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
S Mirarab, T Warnow
Bioinformatics 31 (12), i44-i52, 2015
6632015
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
C Zhang, M Rabiee, E Sayyari, S Mirarab
BMC bioinformatics 19 (6), 15-30, 2018
6022018
Data access for the 1,000 Plants (1KP) project
N Matasci, LH Hung, Z Yan, EJ Carpenter, NJ Wickett, S Mirarab, ...
Gigascience 3 (1), 2047-217X-3-17, 2014
4642014
One thousand plant transcriptomes and the phylogenomics of green plants
JH Leebens-Mack, MS Barker, EJ Carpenter, MK Deyholos, ...
4622019
Fast coalescent-based computation of local branch support from quartet frequencies
E Sayyari, S Mirarab
Molecular biology and evolution 33 (7), 1654-1668, 2016
3692016
American Gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), e00031-18, 2018
2922018
PASTA: ultra-large multiple sequence alignment for nucleotide and amino-acid sequences
S Mirarab, N Nguyen, S Guo, LS Wang, J Kim, T Warnow
Journal of Computational Biology 22 (5), 377-386, 2015
2722015
Evaluating summary methods for multilocus species tree estimation in the presence of incomplete lineage sorting
S Mirarab, MS Bayzid, T Warnow
Systematic Biology 65 (3), 366-380, 2016
2132016
Statistical binning enables an accurate coalescent-based estimation of the avian tree
S Mirarab, MS Bayzid, B Boussau, T Warnow
Science 346 (6215), 2014
2032014
The effects of time constraints on test case prioritization: A series of controlled experiments
H Do, S Mirarab, L Tahvildari, G Rothermel
IEEE Transactions on Software Engineering 36 (5), 593-617, 2010
1952010
The interrelationships of placental mammals and the limits of phylogenetic inference
JE Tarver, M Dos Reis, S Mirarab, RJ Moran, S Parker, JE O’Reilly, ...
Genome biology and evolution 8 (2), 330-344, 2016
1702016
Phylogenetic placement of exact amplicon sequences improves associations with clinical information
S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ...
Msystems 3 (3), e00021-18, 2018
1432018
ASTRAL-III: increased scalability and impacts of contracting low support branches
C Zhang, E Sayyari, S Mirarab
RECOMB international workshop on comparative genomics, 53-75, 2017
1362017
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
L Chen, Q Qiu, YU Jiang, K Wang, Z Lin, Z Li, F Bibi, Y Yang, J Wang, ...
Science 364 (6446), 2019
1182019
A comparative study of SVDquartets and other coalescent-based species tree estimation methods
J Chou, A Gupta, S Yaduvanshi, R Davidson, M Nute, S Mirarab, ...
BMC genomics 16 (10), 1-11, 2015
1172015
SEPP: SATé-enabled phylogenetic placement
S Mirarab, N Nguyen, T Warnow
Biocomputing 2012, 247-258, 2012
1122012
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Articles 1–20