Veronika Navrátilová
Veronika Navrátilová
Department of Physical Chemistry, Faculty of Science, Palacký University
Verified email at
Cited by
Cited by
MOLE 2.0: advanced approach for analysis of biomacromolecular channels
D Sehnal, RS Vařeková, K Berka, L Pravda, V Navrátilová, P Banáš, ...
Journal of cheminformatics 5 (1), 39, 2013
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels
K Berka, O Hanák, D Sehnal, P Banáš, V Navratilova, D Jaiswal, ...
Nucleic acids research 40 (W1), W222-W227, 2012
Dynamics and hydration of the active sites of mammalian cytochromes P450 probed by molecular dynamics simulations
T Hendrychova, K Berka, V Navratilova, P Anzenbacher, M Otyepka
Current drug metabolism 13 (2), 177-189, 2012
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)
L Pravda, D Sehnal, D Toušek, V Navrátilová, V Bazgier, K Berka, ...
Nucleic acids research 46 (W1), W368-W373, 2018
Role of enzyme flexibility in ligand access and egress to active site: bias-exchange metadynamics study of 1, 3, 7-trimethyluric acid in cytochrome P450 3A4
M Paloncýová, V Navrátilová, K Berka, A Laio, M Otyepka
Journal of Chemical Theory and Computation 12 (4), 2101-2109, 2016
The role of protein-protein and protein-membrane interactions on P450 function
EE Scott, CR Wolf, M Otyepka, SC Humphreys, JR Reed, CJ Henderson, ...
Drug Metabolism and Disposition 44 (4), 576-590, 2016
Membrane-attached mammalian cytochromes P450: an overview of the membrane's effects on structure, drug binding, and interactions with redox partners
M Šrejber, V Navrátilová, M Paloncýová, V Bazgier, K Berka, ...
Journal of inorganic biochemistry 183, 117-136, 2018
Effect of cholesterol on the structure of membrane-attached cytochrome P450 3A4
V Navrátilová, M Paloncýová, M Kajšová, K Berka, M Otyepka
Journal of Chemical Information and Modeling 55 (3), 628-635, 2015
ChannelsDB: database of biomacromolecular tunnels and pores
L Pravda, D Sehnal, R Svobodová Vařeková, V Navrátilová, D Toušek, ...
Nucleic acids research 46 (D1), D399-D405, 2018
Effect of lipid charge on membrane immersion of cytochrome P450 3A4
V Navrátilová, M Paloncýová, K Berka, M Otyepka
The Journal of Physical Chemistry B 120 (43), 11205-11213, 2016
Molecular insights into the role of a distal F240A mutation that alters CYP1A1 activity towards persistent organic pollutants
V Navrátilová, M Paloncýová, K Berka, S Mise, Y Haga, C Matsumura, ...
Biochimica et Biophysica Acta (BBA)-General Subjects 1861 (11), 2852-2860, 2017
Secondary Structure Elements-Annotations and Schematic 2D Visualizations Stable for Individual Protein Families
RS Varekova, A Midlik, IH Varekova, J Hutar, V Navratilova, J Koca, ...
Biophysical Journal 114 (3), 46a-47a, 2018
Význam zápisů v katastru nemovitostí pro zjištění ochrany vlastnického práva
Diplomová práce. Brno: Masarykova univerzita, 2012
Automated Family-Wide Annotation of Secondary Structure Elements
A Midlik, IH Vařeková, J Hutař, TR Moturu, V Navrátilová, J Koča, K Berka, ...
Protein Supersecondary Structures, 47-71, 2019
Channelsdb and moleonline-database and tool for analysis of biomacromolecular tunnels and pores
L Pravda, D Sehnal, K Berka, V Navrátilová, D Toušěk, V Bazgier, ...
Biophysical Journal 114 (3), 342a-343a, 2018
Uncovering of Cytochrome P450 Anatomy by SecStrAnnotator
A Midlik, V Navratilova, TR Moturu, J Koca, R Svobodova, K Berka
BioRxiv, 2020
Annotation of protein secondary structure elements for whole protein families
A Midlik, I Hutařová Vařeková, J Hutař, V Navrátilová, ...
Cytochrome P450 Oxidoreductase Simulations: Cofactors Movement and Structural Changes: PH-038
M Srejber, V Navratilova, M Otyepka, K Berka
Protein Science 24, 166-167, 2015
Effect of Membrane Composition on the Structure of Membrane-Attached Cytochrome P450 3A4: PH-032
V Navratilova, M Paloncyova, M Kajsova, K Berka, M Otyepka
Protein Science 24, 162-163, 2015
Supporting Information for Role of Enzyme Flexibility in Ligand Access and Egress to Active Site–Bias-Exchange Metadynamics Study of 1, 3, 7-Trimethyluric Acid in Cytochrome …
M Paloncýová, V Navrátilová, K Berka, A Laio, M Otyepka
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