| Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya, M Hernández-Oñate, ... Genome biology 17, 1-18, 2016 | 219 | 2016 |
| Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies S Patalano, A Vlasova, C Wyatt, P Ewels, F Camara, PG Ferreira, ... Proceedings of the National Academy of Sciences 112 (45), 13970-13975, 2015 | 210 | 2015 |
| The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia R Beekman, V Chapaprieta, N Russiñol, R Vilarrasa-Blasi, ... Nature medicine 24 (6), 868-880, 2018 | 186 | 2018 |
| Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life A Figueras, D Robledo, A Corvelo, M Hermida, P Pereiro, JA Rubiolo, ... DNA research 23 (3), 181-192, 2016 | 178 | 2016 |
| Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ... Genome biology 17, 1-19, 2016 | 170 | 2016 |
| Genomic history of the origin and domestication of common bean unveils its closest sister species M Rendón-Anaya, JM Montero-Vargas, S Saburido-Álvarez, A Vlasova, ... Genome biology 18, 1-17, 2017 | 161 | 2017 |
| Ten steps to get started in Genome Assembly and Annotation VD Del Angel, E Hjerde, L Sterck, S Capella-Gutierrez, C Notredame, ... F1000Research 7, 2018 | 145 | 2018 |
| Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel M Gerdol, R Moreira, F Cruz, J Gómez-Garrido, A Vlasova, U Rosani, ... Genome biology 21, 1-21, 2020 | 131 | 2020 |
| Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence T Alioto, KG Alexiou, A Bardil, F Barteri, R Castanera, F Cruz, A Dhingra, ... The Plant Journal 101 (2), 455-472, 2020 | 107 | 2020 |
| PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants W Sanseverino, A Hermoso, R D’Alessandro, A Vlasova, G Andolfo, ... Nucleic acids research 41 (D1), D1167-D1171, 2012 | 107 | 2012 |
| Annotated Expressed Sequence Tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource AA Adzhubei, AV Vlasova, H Hagen-Larsen, TA Ruden, JK Laerdahl, ... BMC genomics 8, 1-15, 2007 | 69 | 2007 |
| A high‐throughput method to identify trans‐activation domains within transcription factor sequences CD Arnold, F Nemčko, AR Woodfin, S Wienerroither, A Vlasova, ... The EMBO journal 37 (16), e98896, 2018 | 57 | 2018 |
| PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC LM Appel, V Franke, M Bruno, I Grishkovskaya, A Kasiliauskaite, ... Nature Communications 12 (1), 6078, 2021 | 38 | 2021 |
| A limited set of transcriptional programs define major cell types A Breschi, M Muñoz-Aguirre, V Wucher, CA Davis, D Garrido-Martín, ... Genome research 30 (7), 1047-1059, 2020 | 35* | 2020 |
| The quest for orthologs orthology benchmark service in 2022 Y Nevers, TEM Jones, D Jyothi, B Yates, M Ferret, L Portell-Silva, L Codo, ... Nucleic Acids Research 50 (W1), W623-W632, 2022 | 32 | 2022 |
| A tetrapeptide‐based method for polyproline II‐type secondary structure prediction PK Vlasov, AV Vlasova, VG Tumanyan, NG Esipova Proteins: Structure, Function, and Bioinformatics 61 (4), 763-768, 2005 | 21 | 2005 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 20 | 2023 |
| The abundance of the long intergenic non-coding RNA 01087 differentiates between luminal and triple-negative breast cancers and predicts patient outcome FDE De Palma, V Del Monaco, JG Pol, M Kremer, V D’argenio, G Stoll, ... Pharmacological Research 161, 105249, 2020 | 16 | 2020 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 16 | 2020 |
| Brain transcriptome sequencing of a natural model of Alzheimer's disease F Altimiras, B Uszczynska-Ratajczak, F Camara, A Vlasova, E Palumbo, ... Frontiers in Aging Neuroscience 9, 64, 2017 | 14 | 2017 |
