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Szymon Stoma
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Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development
S Stoma, M Lucas, J Chopard, M Schaedel, J Traas, C Godin
PLoS computational biology 4 (10), e1000207, 2008
2102008
Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy
A Gomariz, PM Helbling, S Isringhausen, U Suessbier, A Becker, A Boss, ...
Nature communications 9 (1), 2532, 2018
1422018
Hypoxia induces a HIF-1-dependent transition from collective-to-amoeboid dissemination in epithelial cancer cells
S Lehmann, V Te Boekhorst, J Odenthal, R Bianchi, S van Helvert, ...
Current Biology 27 (3), 392-400, 2017
1412017
Modeling dynamics of cell-to-cell variability in TRAIL-induced apoptosis explains fractional killing and predicts reversible resistance
F Bertaux, S Stoma, D Drasdo, G Batt
PLoS computational biology 10 (10), e1003893, 2014
722014
In Vivo Fluorescence Imaging of the Activity of CEA TCB, a Novel T-Cell Bispecific Antibody, Reveals Highly Specific Tumor Targeting and Fast Induction of T-Cell …
S Lehmann, R Perera, HP Grimm, J Sam, S Colombetti, T Fauti, L Fahrni, ...
Clinical Cancer Research 22 (17), 4417-4427, 2016
692016
Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform
C Versari, S Stoma, K Batmanov, A Llamosi, F Mroz, A Kaczmarek, ...
Journal of The Royal Society Interface 14 (127), 20160705, 2017
682017
Bridging the gaps in systems biology
M Cvijovic, J Almquist, J Hagmar, S Hohmann, HM Kaltenbach, E Klipp, ...
Molecular Genetics and Genomics 289, 727-734, 2014
652014
AutoTube: a novel software for the automated morphometric analysis of vascular networks in tissues
JA Montoya-Zegarra, E Russo, P Runge, M Jadhav, AH Willrodt, S Stoma, ...
Angiogenesis 22, 223-236, 2019
622019
VEGF-A regulates cellular localization of SR-BI as well as transendothelial transport of HDL but not LDL
S Velagapudi, M Yalcinkaya, A Piemontese, R Meier, SF Nørrelykke, ...
Arteriosclerosis, thrombosis, and vascular biology 37 (5), 794-803, 2017
502017
STL-based analysis of TRAIL-induced apoptosis challenges the notion of type I/type II cell line classification
S Stoma, A Donzé, F Bertaux, O Maler, G Batt
PLoS computational biology 9 (5), e1003056, 2013
302013
STSE: Spatio-temporal simulation environment dedicated to biology
S Stoma, M Fröhlich, S Gerber, E Klipp
BMC bioinformatics 12, 1-11, 2011
132011
Posttranscriptional regulation of the human LDL receptor by the U2-Spliceosome
P Zanoni, G Panteloglou, A Othman, JT Haas, R Meier, A Rimbert, ...
Circulation research 130 (1), 80-95, 2022
122022
Using mechanics in the modelling of meristem morphogenesis
S Stoma, J Chopard, C Godin, J Traas
5th International Workshop on functional-structural plant models, 52, 1--4, 2007
112007
Detecting variation in starch granule size and morphology by high-throughput microscopy and flow cytometry
M Thieme, A Hochmuth, TE Ilse, JA Cuesta-Seijo, S Stoma, R Meier, ...
Carbohydrate Polymers 299, 120169, 2023
82023
OpenAlea: An open-source platform for the integration of heterogeneous FSPM components
S Dufour-Kowalski, C Pradal, N Dones, PB de Reuille, F Boudon, ...
FSPM07-5th International Workshop on Functional-Structural Plant Models, P36 …, 2007
62007
How modifications of corneal cross-linking protocols influence corneal resistance to enzymatic digestion and treatment depth
M Kowalska, E Mischi, S Stoma, SF Nørrelykke, S Hartnack, SA Pot
Translational vision science & technology 12 (5), 18-18, 2023
52023
Defining modeling strategies for Systems Biology
J Stelling, P Mendes, F Tonin, E Klipp, R Zecchina, M Heinemann, ...
Technical report, FutureSysBio Workshop, 2011
52011
The U2-spliceosome and its interactors regulate the levels and activity of the LDL receptor in humans
P Zanoni, G Panteloglou, A Othman, JT Haas, R Meier, A Rimbert, ...
Atherosclerosis 315, e15, 2020
2020
Spatial analysis of the bone marrow stroma using deep learning
A Gomariz, S Isringhausen, P Helbling, U Suessbier, A Becker, A Boss, ...
SWISS MEDICAL WEEKLY 148, 25S-25S, 2018
2018
Multiscale image-based quantitative analysis of bone marrow stromal network topology reveals strict spatial constraints for hematopoietic-stromal cellular interactions
A Gomariz, P Helbling, S Isringhausen, U Suessbier, A Becker, A Boss, ...
HAEMATOLOGICA 102, 78-79, 2017
2017
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