Matej Lexa

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Tomáš MartínekBrno University of Technology, Faculty of Information TechnologyVerified email at fit.vutbr.cz
Eduard KejnovskyInstitute of Biophysics, Academy of Sciences of the Czech republicVerified email at ibp.cz
Jaroslav ZendulkaFaculty of Information Technology, Brno University of TechnologyVerified email at fit.vut.cz
Giorgio ValleProfessor of Molecular Biology, University of Padua, ItalyVerified email at unipd.it
Petr MullerMasaryk Memorial Cancer InstituteVerified email at mou.cz
Jiri MacasPrincipal investigator at Biology Centre ASCR, Ceske Budejovice, Czech RepublicVerified email at umbr.cas.cz
Petr NovakResearch ScientistVerified email at umbr.cas.cz
Vaclav BrazdaInstitute of Biophysics Czech Academy of SciencesVerified email at ibp.cz
Martin BartasLaboratory of Molecular Biology and Bioinformatics, University of OstravaVerified email at student.osu.cz
Pratik Goswami, PhDPost Doctoral Fellow, Department of Cancer Biology, University of Kansas Medical CenterVerified email at kumc.edu
Nicola CannataUniversity of CamerinoVerified email at unicam.it
Chiara RomualdiDipartimento Biologia, Università di PadovaVerified email at unipd.it
Nicola VituloUniversity of VeronaVerified email at univr.it
Davide CampagnaSpecialist in Internal Medicine, University of Catania, ItalyVerified email at unict.it
Vinod SubramaniamUniversity of TwenteVerified email at utwente.nl
Martin BenninkProfessor Applied Nanotechnology, Saxion University of Applied SciencesVerified email at saxion.nl
Zdenek SpacilMasaryk UniversityVerified email at u.washington.edu
Darshak GadaraPostdoctoral Fellow at Washington UniversityVerified email at wustl.edu
Vaclav SnaselVSB -Technical University of OstravaVerified email at vsb.cz
Lucie GrodeckáVerified email at cktch.cz

Matej Lexa

Masaryk University, Faculty of Informatics, Brno, Czech Republic

Verified email at fi.muni.cz - Homepage

Bioinformatics Computer Science Molecular Biology Plant Physiology


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pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R J Hon, T Martínek, J Zendulka, M Lexa Bioinformatics 33 (21), 3373-79, 2017	133	2017
The impact of DNA extraction methods on stool bacterial and fungal microbiota community recovery K Fiedorová, M Radvanský, E Němcová, H Grombiříková, J Bosák, ... Frontiers in Microbiology 10, 821, 2019	97	2019
Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY₁Y₂) in the Dioecious Plant Rumex acetosa P Steflova, V Tokan, I Vogel, M Lexa, J Macas, P Novak, R Hobza, ... Genome biology and evolution 5 (4), 769-782, 2013	69	2013
Virtual PCR. M Lexa, J Horák, B Brzobohaty Bioinformatics 17 (1), 192-193, 2001	66	2001
Effects of isoflavone-enriched feed on the rumen microbiota in dairy cows J Kasparovska, M Pecinkova, K Dadakova, L Krizova, S Hadrova, M Lexa, ... PLoS ONE 11 (4), e0154642, 2016	62	2016
Dynamics of endogenous cytokinin pools in tobacco seedlings: a modelling approach M Lexa, T Genkov, J Malbeck, I Macháčková, B Brzobohatý Annals of botany 91 (5), 585-597, 2003	60	2003
RAP: a new computer program for de novo identification of repeated sequences in whole genomes D Campagna, C Romualdi, N Vitulo, M Del Favero, M Lexa, N Cannata, ... Bioinformatics 21 (5), 582-588, 2005	58	2005
Preferential Binding of Hot Spot Mutant p53 Proteins to Supercoiled DNA In Vitro and in Cells M Brázdová, L Navratilova, V Tichý, K Němcová, M Lexa, R Hrstka, ... PLoS One 8 (3), e59567, 2013	53	2013
Hammock: A Hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets A Krejci, T Hupp, M Lexa, B Vojtesek, P Muller Bioinformatics 32 (1), 9-16, 2016	51	2016
PRIMEX: rapid identification of oligonucleotide matches in whole genomes M Lexa, G Valle Bioinformatics 19 (18), 2486-2488, 2003	50	2003
Transposable elements and G-quadruplexes E Kejnovsky, V Tokan, M Lexa Chromosome Research 23 (3), 615-623, 2015	49	2015
Pseudomonas prosekii sp. nov., a Novel Psychrotrophic Bacterium from Antarctica M Kosina, M Barták, I Mašlaňová, AV Pascutti, O Šedo, M Lexa, ... Current Microbiology 67 (6), 637-646, 2013	48	2013
Bacterial but not fungal gut microbiota alterations are associated with common variable immunodeficiency (CVID) phenotype K Fiedorová, M Radvanský, J Bosák, H Grombiříková, E Němcová, ... Frontiers in Immunology 10, 1914, 2019	44	2019
Quadruplex-forming sequences occupy discrete regions inside plant LTR retrotransposons M Lexa, E Kejnovský, P Šteflová, H Konvalinová, M Vorlíčková, B Vyskot Nucleic Acids Research 42 (2), 968-978, 2014	44	2014
Growth and nitrogen relations in reciprocal grafts of wild-type and nitrate reductase-deficient mutants of pea (Pisum sativum L. var. Juneau) M Lexa, JM Cheeseman Journal of Experimental Botany 48 (6), 1241-1250, 1997	37	1997
What can long terminal repeats tell us about the age of LTR retrotransposons, gene conversion and ectopic recombination? P Jedlicka, M Lexa, E Kejnovsky Frontiers in plant science 11, 512125, 2020	36	2020
A dynamic programming algorithm for identification of triplex-forming sequences M Lexa, T Martínek, I Burgetová, D Kopeček, M Brázdová Bioinformatics 27 (18), 2510-2517, 2011	36	2011
Guanine quadruplexes are formed by specific regions of human transposable elements M Lexa, P Steflova, T Martinek, M Vorlickova, B Vyskot, E Kejnovsky BMC Genomics 15, 1032, 2014	35	2014
Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences J Hon, T Martínek, K Rajdl, M Lexa Bioinformatics 29 (15), 1900-1901, 2013	33	2013
SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci P Goswami, M Bartas, M Lexa, N Bohálová, A Volná, J Červeň, ... Briefings in Bioinformatics 22 (2), 1338-1345, 2021	26	2021

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