Sledovat
Deniz Yorukoglu
Název
Citace
Citace
Rok
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ...
Bioinformatics 26 (12), i350-i357, 2010
2732010
Alu repeat discovery and characterization within human genomes
F Hormozdiari, C Alkan, M Ventura, I Hajirasouliha, M Malig, F Hach, ...
Genome research 21 (6), 840-849, 2011
1152011
HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data
E Berger, D Yorukoglu, J Peng, B Berger
PLoS computational biology 10 (3), e1003502, 2014
1042014
Quality score compression improves genotyping accuracy
YW Yu, D Yorukoglu, J Peng, B Berger
Nature biotechnology 33 (3), 240-243, 2015
762015
Fast genotyping of known SNPs through approximate k-mer matching
A Shajii, D Yorukoglu, Y William Yu, B Berger
Bioinformatics 32 (17), i538-i544, 2016
582016
Compressive mapping for next-generation sequencing
D Yorukoglu, YW Yu, J Peng, B Berger
Nature biotechnology 34 (4), 374-376, 2016
472016
Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification
YW Yu, D Yorukoglu, B Berger
Research in Computational Molecular Biology: 18th Annual International …, 2014
282014
Dissect: detection and characterization of novel structural alterations in transcribed sequences
D Yorukoglu, F Hach, L Swanson, CC Collins, I Birol, SC Sahinalp
Bioinformatics 28 (12), i179-i187, 2012
282012
Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets
E Berger, D Yorukoglu, L Zhang, SK Nyquist, AK Shalek, M Kellis, ...
Nature communications 11 (1), 4662, 2020
202020
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies
L Swanson, G Robertson, KL Mungall, YS Butterfield, R Chiu, RD Corbett, ...
BMC genomics 14, 1-19, 2013
182013
Topological signatures for population admixture
L Parida, F Utro, D Yorukoglu, AP Carrieri, D Kuhn, S Basu
Research in Computational Molecular Biology: 19th Annual International …, 2015
112015
Research in computational molecular biology
B Berger, D Yorukoglu, B Berger
Lecture Notes in Computer Science 6044, 2010
82010
Haptree-x: An integrative bayesian framework for haplotype reconstruction from transcriptome and genome sequencing data
E Berger, D Yorukoglu, B Berger
Research in Computational Molecular Biology: 19th Annual International …, 2015
72015
Compressively-accelerated read mapping
BB Leighton, D Yörükoglu
US Patent App. 14/053,387, 2014
52014
Compressively-accelerated read mapping framework for next-generation sequencing
BB Leighton, D Yorukoglu, J Peng
US Patent 10,230,390, 2019
42019
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics 26: i350–i357
F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ...
32010
Discovery of biomarkers for hexachlorobenzene toxicity using population based methods on gene expression data
C Meydan, A Küçükural, D Yörükoğlu, OU Sezerman
Pattern Recognition in Bioinformatics: Third IAPR International Conference …, 2008
32008
Quality score compression apparatus and method for improving downstream accuracy
BB Leighton, D Yorukoglu, YW Yu, J Peng
US Patent 11,762,813, 2023
12023
Compressively-accelerated read mapping framework for next-generation sequencing
BB Leighton, D Yorukoglu, J Peng
US Patent 11,632,125, 2023
12023
Compressively-accelerated read mapping framework for next-generation sequencing
BB Leighton, D Yorukoglu, J Peng
US Patent 11,031,950, 2021
12021
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Články 1–20