Gemma L. Holliday
Gemma L. Holliday
Medicines Discovery Catapult
Verified email at md.catapult.org.uk
Title
Cited by
Cited by
Year
InterPro in 2017—beyond protein family and domain annotations
RD Finn, TK Attwood, PC Babbitt, A Bateman, P Bork, AJ Bridge, ...
Nucleic acids research 45 (D1), D190-D199, 2017
10772017
Metal ions in biological catalysis: from enzyme databases to general principles
C Andreini, I Bertini, G Cavallaro, GL Holliday, JM Thornton
JBIC Journal of Biological Inorganic Chemistry 13 (8), 1205-1218, 2008
7542008
The structure–function linkage database
E Akiva, S Brown, DE Almonacid, AE Barber 2nd, AF Custer, MA Hicks, ...
Nucleic acids research 42 (D1), D521-D530, 2014
1682014
Small molecule subgraph detector (SMSD) toolkit
SA Rahman, M Bashton, GL Holliday, R Schrader, JM Thornton
Journal of cheminformatics 1 (1), 12, 2009
1652009
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes
N Furnham, GL Holliday, TAP de Beer, JOB Jacobsen, WR Pearson, ...
Nucleic acids research 42 (D1), D485-D489, 2014
1462014
Understanding the functional roles of amino acid residues in enzyme catalysis
GL Holliday, JBO Mitchell, JM Thornton
Journal of molecular biology 390 (3), 560-577, 2009
1152009
EC-BLAST: a tool to automatically search and compare enzyme reactions
SA Rahman, SM Cuesta, N Furnham, GL Holliday, JM Thornton
Nature methods 11 (2), 171-174, 2014
882014
Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies
N Furnham, I Sillitoe, GL Holliday, AL Cuff, RA Laskowski, CA Orengo, ...
PLoS Comput Biol 8 (3), e1002403, 2012
812012
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms
GL Holliday, DE Almonacid, GJ Bartlett, NM O'Boyle, JW Torrance, ...
Nucleic acids research 35 (suppl_1), D515-D520, 2007
782007
MACiE: exploring the diversity of biochemical reactions
GL Holliday, C Andreini, JD Fischer, SA Rahman, DE Almonacid, ...
Nucleic acids research 40 (D1), D783-D789, 2012
762012
Chemical markup, XML, and the world wide web. 6. CMLReact, an XML vocabulary for chemical reactions
GL Holliday, P Murray-Rust, HS Rzepa
Journal of chemical information and modeling 46 (1), 145-157, 2006
702006
Evolution of enzymes and pathways for the biosynthesis of cofactors
GL Holliday, JM Thornton, A Marquet, AG Smith, F Rébeillé, R Mendel, ...
Natural product reports 24 (5), 972-987, 2007
572007
Metal-MACiE: a database of metals involved in biological catalysis
C Andreini, I Bertini, G Cavallaro, GL Holliday, JM Thornton
Bioinformatics 25 (16), 2088-2089, 2009
552009
The structures and physicochemical properties of organic cofactors in biocatalysis
JD Fischer, GL Holliday, SA Rahman, JM Thornton
Journal of molecular biology 403 (5), 803-824, 2010
502010
The chemistry of protein catalysis
GL Holliday, DE Almonacid, JBO Mitchell, JM Thornton
Journal of molecular biology 372 (5), 1261-1277, 2007
502007
MACiE: a database of enzyme reaction mechanisms
GL Holliday, GJ Bartlett, DE Almonacid, NM O'Boyle, P Murray-Rust, ...
Bioinformatics 21 (23), 4315-4316, 2005
482005
[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis
JN Betz, NW Boswell, CJ Fugate, GL Holliday, E Akiva, AG Scott, ...
Biochemistry 54 (9), 1807-1818, 2015
442015
Using reaction mechanism to measure enzyme similarity
NM O'Boyle, GL Holliday, DE Almonacid, JBO Mitchell
Journal of molecular biology 368 (5), 1484-1499, 2007
442007
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites
AJM Ribeiro, GL Holliday, N Furnham, JD Tyzack, K Ferris, JM Thornton
Nucleic acids research 46 (D1), D618-D623, 2018
432018
Reaction Decoder Tool (RDT): extracting features from chemical reactions
SA Rahman, G Torrance, L Baldacci, S Martínez Cuesta, F Fenninger, ...
Bioinformatics 32 (13), 2065-2066, 2016
412016
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