David Aanensen
David Aanensen
Professor at Big Data Institute, University of Oxford
Verified email at bdi.ox.ac.uk
Title
Cited by
Cited by
Year
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
EJ Feil, BC Li, DM Aanensen, WP Hanage, BG Spratt
Journal of bacteriology 186 (5), 1518-1530, 2004
19052004
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes
SD Bentley, DM Aanensen, A Mavroidi, D Saunders, E Rabbinowitsch, ...
PLoS Genet 2 (3), e31, 2006
6582006
Geographic distribution of Staphylococcus aureus causing invasive infections in Europe: a molecular-epidemiological analysis
H Grundmann, DM Aanensen, CC Van Den Wijngaard, BG Spratt, ...
PLoS Med 7 (1), e1000215, 2010
5592010
Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei
D Godoy, G Randle, AJ Simpson, DM Aanensen, TL Pitt, R Kinoshita, ...
Journal of clinical microbiology 41 (5), 2068-2079, 2003
5152003
Consensus multi-locus sequence typing scheme for Cryptococcus neoformans and Cryptococcus gattii
W Meyer, DM Aanensen, T Boekhout, M Cogliati, MR Diaz, MC Esposto, ...
Medical mycology 47 (6), 561-570, 2009
4232009
EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection
DM Aanensen, DM Huntley, EJ Feil, BG Spratt
PloS one 4 (9), e6968, 2009
3842009
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ...
Genome research 23 (4), 653-664, 2013
3822013
Hierarchical and spatially explicit clustering of DNA sequences with BAPS software
L Cheng, TR Connor, J Sirén, DM Aanensen, J Corander
Molecular biology and evolution 30 (5), 1224-1228, 2013
3762013
Rapid sequence-based identification of gonococcal transmission clusters in a large metropolitan area
IMC Martin, CA Ison, DM Aanensen, KA Fenton, BG Spratt
The Journal of infectious diseases 189 (8), 1497-1505, 2004
3642004
Mapping the global emergence of Batrachochytrium dendrobatidis, the amphibian chytrid fungus
DH Olson, DM Aanensen, KL Ronnenberg, CI Powell, SF Walker, J Bielby, ...
PloS one 8 (2), e56802, 2013
3372013
The multilocus sequence typing network: mlst. net
DM Aanensen, BG Spratt
Nucleic acids research 33 (suppl_2), W728-W733, 2005
3132005
Dense genomic sampling identifies highways of pneumococcal recombination
C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ...
Nature genetics 46 (3), 305-309, 2014
3012014
Occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in the European survey of carbapenemase-producing Enterobacteriaceae (EuSCAPE): a prospective …
H Grundmann, C Glasner, B Albiger, DM Aanensen, CT Tomlinson, ...
The Lancet Infectious Diseases 17 (2), 153-163, 2017
2852017
MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi
G Margos, AG Gatewood, DM Aanensen, K Hanincová, D Terekhova, ...
Proceedings of the National Academy of Sciences 105 (25), 8730-8735, 2008
2782008
Displaying the relatedness among isolates of bacterial species–the eBURST approach
BG Spratt, WP Hanage, B Li, DM Aanensen, EJ Feil
FEMS microbiology letters 241 (2), 129-134, 2004
2262004
Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens
MTG Holden, Z Heather, R Paillot, KF Steward, K Webb, F Ainslie, ...
PLoS Pathog 5 (3), e1000346, 2009
2032009
Assigning strains to bacterial species via the internet
CJ Bishop, DM Aanensen, GE Jordan, M Kilian, WP Hanage, BG Spratt
BMC biology 7 (1), 1-20, 2009
1952009
Recent Asian origin of chytrid fungi causing global amphibian declines
SJ O’hanlon, A Rieux, RA Farrer, GM Rosa, B Waldman, A Bataille, ...
Science 360 (6389), 621-627, 2018
1932018
Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus
PR McAdam, KE Templeton, GF Edwards, MTG Holden, EJ Feil, ...
Proceedings of the National Academy of Sciences 109 (23), 9107-9112, 2012
1692012
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
S Argimón, K Abudahab, RJE Goater, A Fedosejev, J Bhai, C Glasner, ...
Microbial genomics 2 (11), 2016
1542016
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